SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000231749
Gene: ABCA9-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr17:68944531-69042784 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_156800301 chr17:69032209-69063501 Sample_02_1568 Heart Cardiac progenitor cells 301 6 728 34 1 37 412 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_113300982 chr17:69034455-69054001 Sample_02_1133 Liver Hepatic stellate cells 982 4 456 20 1 32 334 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_156900555 chr17:69034849-69052583 Sample_02_1569 Endothelial Endothelial cells 555 2 418 19 1 32 334 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_111900437 chr17:69042608-69095976 Sample_02_1119 Blood KBM7 437 23 1316 79 5 68 763 ABCA9,ABCA6,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_083101176 chr17:69043203-69051639 Sample_02_0831 Umblical vein HUVECs_TNF0min 1176 8 208 6 1 25 206 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_143801462 chr17:69043949-69064148 Sample_02_1438 Liver LSEC 1462 4 493 20 1 24 176 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_132800687 chr17:69045203-69060981 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 687 5 371 13 1 19 117 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_075700802 chr17:69045329-69049979 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 802 1 117 3 1 5 65 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_049300423 chr17:69045521-69049688 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 423 1 103 3 1 5 41 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_049400757 chr17:69045551-69049560 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 757 1 100 3 1 5 35 ABCA9,ABCA9-AS1,MIR4524B
SE_02_157300424 chr17:69045678-69068734 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 424 15 565 29 1 18 96 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_075400995 chr17:69045749-69049186 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 995 1 93 3 1 0 7 ABCA9,ABCA9-AS1
SE_02_091501201 chr17:69046049-69063545 Sample_02_0915 Heart left ventricle_DCM_LV1371 1201 8 420 18 1 18 96 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_049500690 chr17:69046050-69049834 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 690 2 96 3 1 5 41 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
SE_02_134800379 chr17:69046124-69068350 Sample_02_1348 Leukophereses leukophereses_p408 379 4 547 29 1 18 96 ABCA9,MIR4524A,ABCA9-AS1,MIR4524B
Genomic distribution of SEs associated with ABCA9-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of ABCA9-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)