SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000166526
Gene: ZNF3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:100064033-100082548 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045300469 chr7:100078221-100096386 Sample_02_0453 Neuroblastoma SJNB3 469 1 495 51 2 118 1492 MIR106B,MCM7,COPS6,ZNF3,MIR25,MIR93,ZSCAN21,AP4M1,TAF6,MBLAC1,CNPY4
SE_02_093801269 chr7:100079302-100092209 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1269 2 298 29 1 72 910 ZNF3,COPS6,MCM7,ZSCAN21,AP4M1,TAF6,MIR93,MBLAC1,CNPY4,MIR106B,MIR25
SE_02_032800381 chr7:100079890-100090106 Sample_02_0328 Embryo H9_naive 381 2 236 23 1 28 509 COPS6,ZNF3,CNPY4,MIR106B,MIR25,TAF6,MCM7,AP4M1,ZSCAN21,MIR93,MBLAC1
SE_02_104700651 chr7:99991228-100066952 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 651 21 1937 168 9 140 2018 ZSCAN21,ZKSCAN1,ZNF3,AZGP1,AP4M1,MIR93,MCM7,AZGP1P1,MIR106B,MIR25,COPS6
SE_02_032600159 chr7:99996339-100066834 Sample_02_0326 Liver hepatocytes_d3 159 14 1779 153 6 140 1680 ZSCAN21,ZKSCAN1,ZNF3,AZGP1P1,MIR106B,MCM7,COPS6,AZGP1,AP4M1,MIR25,MIR93
Genomic distribution of SEs associated with ZNF3
Genome Browser

The strength of the tissue affected by the gene

Expression of ZNF3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)