SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000166478
Gene: ZNF143 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:9460319-9528524 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_074701037 chr11:9445244-9463790 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1037 5 532 34 2 102 518 ZNF143,IPO7,LOC644656,SNORA23
SE_02_055500599 chr11:9447179-9463515 Sample_02_0555 Other HAP1_WT 599 3 483 32 1 42 360 ZNF143,IPO7,LOC644656,SNORA23
SE_02_003801254 chr11:9447532-9462461 Sample_02_0038 Embryo DE 1254 2 439 32 1 42 344 IPO7,LOC644656,ZNF143,SNORA23
SE_02_143400748 chr11:9449083-9475847 Sample_02_1434 Trophoblast trophoblast stem cells 748 3 796 54 1 68 445 ZNF143,LOC644656,SNORA23
SE_02_143500768 chr11:9451007-9463339 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 768 2 347 25 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_076000655 chr11:9456504-9463880 Sample_02_0760 Ovary BIN-67_SMARCA4 655 2 206 12 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_093000913 chr11:9456548-9463577 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 913 2 198 12 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_103601883 chr11:9456610-9472477 Sample_02_1036 Mammary gland HCC70_XY018 1883 4 472 29 1 45 345 ZNF143,LOC644656,SNORA23
SE_02_122200262 chr11:9458114-9463898 Sample_02_1222 Bone marrow KMS12 262 2 173 10 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_135000711 chr11:9458123-9463913 Sample_02_1350 Leukophereses leukophereses_p456 711 4 173 10 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_037200650 chr11:9458646-9462874 Sample_02_0372 Skeletal muscle RMS008 650 1 131 10 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_012500435 chr11:9458850-9464113 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 435 1 162 10 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_101700997 chr11:9459035-9477215 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 997 3 553 34 1 68 445 ZNF143,LOC644656,SNORA23
SE_00_001800374 chr11:9459166-9462390 Sample_00_0018 Dermal fibroblasts iPS-18axian 374 1 100 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_01_001200594 chr11:9459196-9464034 Sample_01_0012 Lung A549_dexamethasone_1h 594 1 147 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_00_002501030 chr11:9459209-9462748 Sample_00_0025 Muscle of leg muscle-of-leg 1030 2 110 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_003900931 chr11:9459223-9462345 Sample_02_0039 Embryo AFG 931 2 100 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_055700660 chr11:9459238-9474360 Sample_02_0557 iPSCs WT hiPSC#1 660 3 465 26 1 65 412 ZNF143,LOC644656,SNORA23
SE_02_101600628 chr11:9459250-9475779 Sample_02_1016 Embryo H9_Mesendoderm_24h 628 2 503 30 1 68 445 ZNF143,LOC644656,SNORA23
SE_02_085701296 chr11:9459305-9473718 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1296 2 448 26 1 51 379 ZNF143,LOC644656,SNORA23
SE_00_001000454 chr11:9459328-9462451 Sample_00_0010 Embryo endodermal-cell 454 1 103 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_099000786 chr11:9459330-9462967 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 786 1 115 6 0 42 301 ZNF143,LOC644656,SNORA23
SE_02_004800929 chr11:9459352-9462429 Sample_02_0048 Embryo endodermal CyT49_HE 929 2 100 6 0 42 301 LOC644656,ZNF143,SNORA23
SE_02_004600475 chr11:9459379-9462653 Sample_02_0046 Embryo endodermal CyT49_ES_D10 475 3 103 6 0 42 297 LOC644656,ZNF143,SNORA23
SE_02_004500883 chr11:9459431-9461814 Sample_02_0045 Embryo endodermal CyT49_ES_D7 883 1 78 4 0 40 286 LOC644656,ZNF143,SNORA23
SE_00_002400986 chr11:9459648-9462737 Sample_00_0024 Embryo mesendoderm 986 2 100 6 0 41 266 LOC644656,ZNF143,SNORA23
SE_02_064901268 chr11:9461013-9463639 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1268 1 81 5 0 15 50 ZNF143,SNORA23,LOC644656
SE_02_077501422 chr11:9464261-9516032 Sample_02_0775 Pancreas EndoC-BH1_SE 1422 13 1567 107 2 86 546 ZNF143,SNORA23,LOC644656
SE_02_075400203 chr11:9495711-9516180 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 203 5 594 36 0 48 282 ZNF143,LOC644656
SE_02_049400050 chr11:9498104-9577076 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 50 12 2087 169 4 171 904 ZNF143,WEE1,LOC644656
SE_02_003601558 chr11:9506015-9535296 Sample_02_0036 Embryo H7 1558 7 837 61 2 60 308 ZNF143,WEE1,LOC644656
SE_02_080800286 chr11:9506055-9584991 Sample_02_0808 Ovary RMG1_ARID1A KO 286 36 2052 166 4 173 1209 ZNF143,WEE1,LOC644656,SWAP70
SE_02_012400256 chr11:9506121-9535921 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 256 5 849 61 2 60 308 ZNF143,WEE1,LOC644656
SE_02_156701184 chr11:9506125-9533987 Sample_02_1567 iPSCs CiPSC 1184 5 801 58 1 59 308 ZNF143,WEE1,LOC644656
SE_02_067700267 chr11:9506367-9520369 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 267 8 392 30 0 35 167 ZNF143,LOC644656
SE_02_086100613 chr11:9506460-9520417 Sample_02_0861 iPSCs SAH_WT 613 7 394 30 0 35 167 ZNF143,LOC644656
SE_02_023700113 chr11:9506871-9576504 Sample_02_0237 Colon V389 113 12 1833 153 4 154 809 WEE1,ZNF143,LOC644656
SE_02_086000602 chr11:9506976-9535248 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 602 10 822 60 2 60 308 ZNF143,WEE1,LOC644656
SE_02_124800630 chr11:9525300-9534981 Sample_02_1248 Bladder RT4 630 4 289 18 1 25 119 ZNF143,WEE1
SE_02_125300288 chr11:9526720-9577276 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 288 9 1297 108 3 131 635 ZNF143,WEE1
Genomic distribution of SEs associated with ZNF143
Genome Browser

The strength of the tissue affected by the gene

Expression of ZNF143

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)