Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000134258 |
| Gene: | VTCN1 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr1:117143587-117210960 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_059400402 | chr1:117089510-117149407 |
Sample_02_0594 | iPSC-derived | neural progenitors | 402 | 9 | 1515 | 135 | 2 | 160 | 1791 | MIR942,TRIM45,VTCN1,TTF2,LOC101929099 |
| SE_02_021100569 | chr1:117113033-117149401 |
Sample_02_0211 | Lung | MRC-5_NFD_1DPT | 569 | 5 | 925 | 83 | 0 | 116 | 918 | VTCN1,TRIM45,MIR942 |
| SE_02_107800284 | chr1:117116224-117148922 |
Sample_02_1078 | Muscle | RMS235_PAX3-NCOA1 | 284 | 15 | 832 | 72 | 0 | 109 | 807 | VTCN1,TRIM45,MIR942 |
| SE_02_107900341 | chr1:117116445-117147794 |
Sample_02_1079 | Muscle | RMS246_PAX3-NCOA1 | 341 | 8 | 793 | 67 | 0 | 109 | 785 | VTCN1,TRIM45,MIR942 |
| SE_02_074000277 | chr1:117116544-117182890 |
Sample_02_0740 | Muscle | RH3 | 277 | 22 | 1708 | 159 | 0 | 218 | 961 | VTCN1,TRIM45,MIR942 |
| SE_02_030700192 | chr1:117116687-117148332 |
Sample_02_0307 | Neuroblastoma | SJNB12 | 192 | 5 | 800 | 67 | 0 | 108 | 766 | VTCN1,TRIM45,MIR942 |
| SE_02_037800289 | chr1:117116784-117149383 |
Sample_02_0378 | Skeletal muscle | SCMC | 289 | 7 | 828 | 73 | 0 | 107 | 754 | VTCN1,TRIM45,MIR942 |
| SE_02_141300401 | chr1:117116905-117172494 |
Sample_02_1413 | Muscle | RH4_sgBRG1 | 401 | 15 | 1392 | 116 | 0 | 181 | 909 | VTCN1,TRIM45,MIR942 |
| SE_02_037000314 | chr1:117117456-117149380 |
Sample_02_0370 | Skeletal muscle | RH4 | 314 | 6 | 813 | 73 | 0 | 105 | 730 | VTCN1,TRIM45,MIR942 |
| SE_02_084000839 | chr1:117118497-117175536 |
Sample_02_0840 | Embryo | hNPCs_R1159Q/+ | 839 | 12 | 1437 | 121 | 0 | 183 | 799 | VTCN1,TRIM45,MIR942 |
| SE_02_125300018 | chr1:117118533-117284721 |
Sample_02_1253 | Mammary gland | CAMA1 ER+/FGFR1-amplified | 18 | 64 | 4697 | 312 | 15 | 361 | 1043 | VTCN1,TRIM45,LINC01525,MIR942 |
| SE_02_149300651 | chr1:117118819-117150918 |
Sample_02_1493 | Skin | SK-MEL-5_DMSO_6h | 651 | 7 | 815 | 74 | 0 | 92 | 564 | VTCN1,TRIM45,MIR942 |
| SE_02_021000306 | chr1:117128031-117172786 |
Sample_02_0210 | Lung | MRC-5_N_1DPT | 306 | 10 | 1104 | 97 | 0 | 120 | 450 | VTCN1,MIR942,TRIM45 |
| SE_02_001100253 | chr1:117144870-117173675 |
Sample_02_0011 | Kidney | A-498_wtVHL | 253 | 7 | 730 | 67 | 0 | 88 | 280 | VTCN1,TRIM45 |
| SE_02_058800360 | chr1:117145157-117151060 |
Sample_02_0588 | Cervix | HeLa Kyoto_untreated | 360 | 7 | 164 | 27 | 0 | 13 | 80 | VTCN1,TRIM45 |
| SE_02_057201168 | chr1:117145252-117150271 |
Sample_02_0572 | Brain | LN229_1_mM_glucose | 1168 | 2 | 135 | 21 | 0 | 13 | 69 | VTCN1,TRIM45 |
| SE_02_079300447 | chr1:117145397-117149499 |
Sample_02_0793 | Brain | MES20 | 447 | 3 | 115 | 19 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_051100150 | chr1:117145726-117150381 |
Sample_02_0511 | Prostate | LNCaP95_shARv7_ETOH | 150 | 1 | 126 | 22 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_050900136 | chr1:117145836-117150392 |
Sample_02_0509 | Prostate | LNCaP95_shGFP_ETOH | 136 | 1 | 123 | 21 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_026800484 | chr1:117146013-117173361 |
Sample_02_0268 | Kidney | A-498 | 484 | 6 | 696 | 62 | 0 | 86 | 225 | VTCN1,TRIM45 |
| SE_02_001000471 | chr1:117146057-117173490 |
Sample_02_0010 | Kidney | A-498_emptyvector | 471 | 5 | 697 | 63 | 0 | 86 | 225 | VTCN1,TRIM45 |
| SE_02_051000174 | chr1:117146104-117149889 |
Sample_02_0510 | Prostate | LNCaP95_shGFP_DHT | 174 | 1 | 106 | 19 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_123300536 | chr1:117146105-117149256 |
Sample_02_1233 | Lung | PC9_miR-4497 mimic | 536 | 1 | 91 | 17 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_123200424 | chr1:117146152-117149249 |
Sample_02_1232 | Lung | PC9_siMED13L-2 | 424 | 3 | 90 | 17 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_051400101 | chr1:117146410-117149756 |
Sample_02_0514 | Prostate | LNCaP95_shARfl_DHT | 101 | 1 | 95 | 16 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_051200078 | chr1:117146545-117149562 |
Sample_02_0512 | Prostate | LNCaP95_shARv7_DHT | 78 | 1 | 91 | 15 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_02_051300166 | chr1:117146578-117149692 |
Sample_02_0513 | Prostate | LNCaP95_shARfl_ETOH | 166 | 3 | 92 | 16 | 0 | 12 | 49 | VTCN1,TRIM45 |
| SE_01_009500775 | chr1:117169584-117189436 |
Sample_01_0095 | Embryo | neuroepithelial stem cell stably expressing HES5 originated from H9 | 775 | 5 | 548 | 50 | 0 | 55 | 35 | VTCN1,TRIM45 |
| SE_00_001000592 | chr1:117169933-117182515 |
Sample_00_0010 | Embryo | endodermal-cell | 592 | 4 | 365 | 44 | 0 | 48 | 34 | VTCN1,TRIM45 |
| SE_00_004800200 | chr1:117170025-117189546 |
Sample_00_0048 | Embryo | neuronal stem cell originated from H1 | 200 | 8 | 539 | 50 | 0 | 55 | 29 | VTCN1,TRIM45 |
| SE_02_009500244 | chr1:117206408-117238778 |
Sample_02_0095 | Mammary gland | MDA-MB-468 | 244 | 4 | 1096 | 64 | 9 | 47 | 97 | VTCN1 |
| SE_02_074900211 | chr1:117206691-117250445 |
Sample_02_0749 | Mammary gland | HCC1599_GSI | 211 | 6 | 1422 | 76 | 9 | 67 | 176 | VTCN1,LINC01525 |
| SE_02_074801036 | chr1:117206741-117216266 |
Sample_02_0748 | Mammary gland | HCC1599_WO | 1036 | 3 | 345 | 21 | 5 | 16 | 97 | VTCN1 |
| SE_02_067200405 | chr1:117208710-117241280 |
Sample_02_0672 | Endometrium | endometrium cancer_DSG | 405 | 9 | 1090 | 67 | 9 | 42 | 97 | VTCN1 |
Genomic distribution of SEs associated with VTCN1