SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000278156
Gene: TSC22D1-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr13:44575893-44580432 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700584 chr13:44507777-44580726 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 584 13 1696 76 2 235 1002 TSC22D1,TSC22D1-AS1
SE_01_009400590 chr13:44521809-44593217 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 590 26 1639 72 1 240 1002 TSC22D1,TSC22D1-AS1
SE_02_053301176 chr13:44538772-44578911 Sample_02_0533 Blood vessel Circle of Willis_54y 1176 12 961 39 0 204 850 TSC22D1,TSC22D1-AS1
SE_02_138200445 chr13:44543764-44580111 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 445 14 892 35 0 154 959 TSC22D1,TSC22D1-AS1
SE_02_138300544 chr13:44543785-44580063 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 544 11 892 35 0 154 948 TSC22D1,TSC22D1-AS1
SE_02_101501026 chr13:44561228-44592443 Sample_02_1015 Embryo H9_ Undifferentiated 1026 7 691 29 0 153 1002 TSC22D1,TSC22D1-AS1
SE_01_009500534 chr13:44566756-44580547 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 534 3 324 10 0 138 990 TSC22D1,TSC22D1-AS1
SE_02_095600725 chr13:44566787-44578707 Sample_02_0956 Brain IDH1_2658 725 6 291 8 0 137 836 TSC22D1,TSC22D1-AS1
SE_02_049500857 chr13:44566937-44578994 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 857 2 296 8 0 138 857 TSC22D1,TSC22D1-AS1
SE_02_049401053 chr13:44567038-44578588 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1053 2 286 8 0 137 823 TSC22D1,TSC22D1-AS1
SE_02_132801149 chr13:44569564-44583265 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1149 5 316 9 0 135 1002 TSC22D1,TSC22D1-AS1
SE_02_103500454 chr13:44570140-44591481 Sample_02_1035 Mammary gland HCC70_Vehicle 454 4 468 16 0 139 1002 TSC22D1,TSC22D1-AS1
SE_02_081500202 chr13:44570822-44579052 Sample_02_0815 Mammary gland SUM159PT 202 2 208 4 0 127 862 TSC22D1,TSC22D1-AS1
SE_02_102000165 chr13:44571060-44578964 Sample_02_1020 Mammary gland SUM159 165 3 199 4 0 127 853 TSC22D1,TSC22D1-AS1
SE_02_066900868 chr13:44571798-44578586 Sample_02_0669 Prostate prostate cancer_DSG 868 2 177 3 0 125 823 TSC22D1,TSC22D1-AS1
SE_02_055500761 chr13:44572082-44580720 Sample_02_0555 Other HAP1_WT 761 3 218 5 0 124 1002 TSC22D1,TSC22D1-AS1
SE_02_118100933 chr13:44572148-44578623 Sample_02_1181 Brain GBM10 933 2 171 2 0 123 826 TSC22D1,TSC22D1-AS1
SE_02_085200476 chr13:44573294-44578782 Sample_02_0852 Mammary gland MCF7L-P 476 3 133 2 0 109 810 TSC22D1,TSC22D1-AS1
SE_02_115900478 chr13:44573294-44578782 Sample_02_1159 Mammary gland MCF7 478 3 133 2 0 109 810 TSC22D1,TSC22D1-AS1
SE_02_044800826 chr13:44573367-44580140 Sample_02_0448 Bone MNNG 826 4 156 3 0 108 921 TSC22D1,TSC22D1-AS1
SE_02_067201310 chr13:44573888-44579974 Sample_02_0672 Endometrium endometrium cancer_DSG 1310 3 143 2 0 92 832 TSC22D1,TSC22D1-AS1
SE_02_081701079 chr13:44575308-44591515 Sample_02_0817 Ovary Epithelial ovarian cancer 1079 4 344 12 0 80 741 TSC22D1,TSC22D1-AS1
SE_02_067401026 chr13:44575428-44580218 Sample_02_0674 Endometrium E1_FA 1026 4 108 3 0 68 689 TSC22D1,TSC22D1-AS1
SE_02_135400800 chr13:44575448-44578801 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 800 1 81 1 0 63 555 TSC22D1,TSC22D1-AS1
SE_02_081601901 chr13:44575459-44590641 Sample_02_0816 Ovary Clear cell ovarian cancer 1901 2 319 12 0 74 714 TSC22D1,TSC22D1-AS1
SE_02_093100411 chr13:44575515-44580076 Sample_02_0931 Embryo H9 UTXKO 411 2 104 2 0 58 652 TSC22D1,TSC22D1-AS1
SE_02_064600740 chr13:44575516-44578632 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 740 1 77 1 0 57 524 TSC22D1,TSC22D1-AS1
SE_02_048900319 chr13:44575567-44578573 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 319 1 73 1 0 56 515 TSC22D1,TSC22D1-AS1
SE_02_138500362 chr13:44575636-44592247 Sample_02_1385 Other iPSCs 362 4 349 15 0 68 685 TSC22D1,TSC22D1-AS1
SE_02_068600643 chr13:44575657-44578672 Sample_02_0686 Lung NCI-H128_no infection 643 1 73 1 0 56 514 TSC22D1,TSC22D1-AS1
SE_02_043900706 chr13:44575668-44578916 Sample_02_0439 Bone Hu09 706 1 78 1 0 56 532 TSC22D1,TSC22D1-AS1
SE_02_064501106 chr13:44575695-44578704 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1106 1 73 1 0 55 516 TSC22D1,TSC22D1-AS1
SE_02_044100744 chr13:44575734-44578955 Sample_02_0441 Bone M112 744 1 79 1 0 56 529 TSC22D1,TSC22D1-AS1
SE_02_093500296 chr13:44575773-44580285 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 296 2 102 3 0 51 651 TSC22D1,TSC22D1-AS1
SE_02_044000445 chr13:44575783-44578596 Sample_02_0440 Bone LM7 445 1 71 1 0 49 497 TSC22D1,TSC22D1-AS1
SE_02_135100699 chr13:44575805-44578950 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 699 1 78 1 0 49 519 TSC22D1,TSC22D1-AS1
SE_02_048200277 chr13:44575811-44578679 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 277 1 71 1 0 48 499 TSC22D1,TSC22D1-AS1
SE_02_143301732 chr13:44575850-44578667 Sample_02_1433 Bone A673 STAG2 null 1732 1 68 1 0 47 490 TSC22D1,TSC22D1-AS1
SE_02_099100894 chr13:44575863-44578888 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 894 1 71 1 0 47 505 TSC22D1,TSC22D1-AS1
SE_02_135300706 chr13:44575871-44578911 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 706 1 72 1 0 47 505 TSC22D1,TSC22D1-AS1
SE_02_135200756 chr13:44575951-44578827 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 756 1 68 1 0 45 486 TSC22D1,TSC22D1-AS1
SE_02_117200759 chr13:44575959-44580455 Sample_02_1172 Embryo H9 WT 759 2 99 3 0 45 631 TSC22D1,TSC22D1-AS1
SE_02_126100378 chr13:44576051-44578920 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 378 1 68 1 0 36 473 TSC22D1,TSC22D1-AS1
SE_02_065000830 chr13:44576066-44578715 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 830 1 63 1 0 34 457 TSC22D1,TSC22D1-AS1
SE_02_074500801 chr13:44576086-44578692 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 801 1 62 1 0 32 446 TSC22D1,TSC22D1-AS1
SE_02_048700327 chr13:44576127-44578633 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 327 1 59 1 0 30 436 TSC22D1,TSC22D1-AS1
SE_02_048600178 chr13:44576155-44578769 Sample_02_0486 Bone marrow HSCe_66y_CD34+,CD38-,Lineage- 178 1 57 1 0 31 445 TSC22D1,TSC22D1-AS1
SE_02_132001166 chr13:44576278-44578622 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1166 1 51 1 0 30 402 TSC22D1,TSC22D1-AS1
SE_02_126000736 chr13:44576291-44578899 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 736 1 56 1 0 31 422 TSC22D1,TSC22D1-AS1
Genomic distribution of SEs associated with TSC22D1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of TSC22D1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)