Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000172315 |
| Gene: | TP53RK | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr20:46684365-46689444 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_152201032 | chr20:46669991-46697511 |
Sample_02_1522 | Skin | A375 RTKi | 1032 | 6 | 730 | 51 | 3 | 29 | 558 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_018500968 | chr20:46673638-46705646 |
Sample_02_0185 | Skin | UACC257 | 968 | 5 | 859 | 71 | 3 | 29 | 513 | SLC13A3,TP53RK,SLC2A10 |
| SE_02_059400925 | chr20:46673776-46700930 |
Sample_02_0594 | iPSC-derived | neural progenitors | 925 | 6 | 720 | 55 | 3 | 29 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_097100652 | chr20:46674024-46704988 |
Sample_02_0971 | Brain | H3.3K27M_XPS124018_xenograft | 652 | 6 | 834 | 67 | 3 | 29 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_00_001000509 | chr20:46674199-46698054 |
Sample_00_0010 | Embryo | endodermal-cell | 509 | 3 | 630 | 40 | 3 | 29 | 513 | SLC13A3,TP53RK,SLC2A10 |
| SE_02_149300639 | chr20:46674393-46705708 |
Sample_02_1493 | Skin | SK-MEL-5_DMSO_6h | 639 | 8 | 844 | 66 | 3 | 29 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_057400640 | chr20:46681640-46697927 |
Sample_02_0574 | Blood | MOLM-13_sgNeg2 | 640 | 4 | 429 | 33 | 2 | 21 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_033600752 | chr20:46681704-46696923 |
Sample_02_0336 | Haematopoietic and lymphoid tissue | SET2 | 752 | 2 | 397 | 28 | 2 | 21 | 513 | SLC13A3,TP53RK,SLC2A10 |
| SE_02_057800677 | chr20:46681888-46697063 |
Sample_02_0578 | Blood | MOLM-13_sgSIK3e4 | 677 | 5 | 396 | 28 | 2 | 21 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_057500699 | chr20:46682448-46697686 |
Sample_02_0575 | Blood | MOLM13_sgLKB1e2 | 699 | 3 | 400 | 30 | 2 | 21 | 513 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_057700706 | chr20:46685842-46697097 |
Sample_02_0577 | Blood | MOLM13_empty | 706 | 1 | 287 | 25 | 2 | 20 | 313 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_099400847 | chr20:46686747-46697256 |
Sample_02_0994 | Blood | MOLM13_SIK3TQ | 847 | 7 | 264 | 25 | 2 | 17 | 267 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_122300517 | chr20:46686764-46698577 |
Sample_02_1223 | Bone marrow | KMS28BM | 517 | 3 | 303 | 29 | 2 | 17 | 263 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_099301049 | chr20:46686922-46697073 |
Sample_02_0993 | Blood | MOLM-13_empty | 1049 | 10 | 254 | 24 | 2 | 16 | 241 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_046400201 | chr20:46686984-46696028 |
Sample_02_0464 | Bone marrow | MOLM-13 | 201 | 6 | 239 | 22 | 1 | 10 | 230 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_097200148 | chr20:46686989-46705172 |
Sample_02_0972 | Brain | H3.3K27M-KO_BT245-D2p8-Rx_R1_cells | 148 | 5 | 486 | 54 | 2 | 15 | 229 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_099500917 | chr20:46687120-46696982 |
Sample_02_0995 | Blood | MOLM-13_empty vector | 917 | 7 | 250 | 24 | 2 | 15 | 211 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_096701045 | chr20:46687275-46705485 |
Sample_02_0967 | Brain | H3.3K27M_JN57 | 1045 | 7 | 483 | 53 | 1 | 13 | 196 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_098200556 | chr20:46687368-46697124 |
Sample_02_0982 | Brain | H3.3K27M-KO_BT245-C2P3 | 556 | 3 | 243 | 22 | 1 | 13 | 189 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_097300162 | chr20:46687495-46701817 |
Sample_02_0973 | Brain | H3.3K27M-KO_BT245-c4p6-Rx_R2_cells | 162 | 4 | 379 | 47 | 1 | 13 | 181 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_098100144 | chr20:46687510-46701800 |
Sample_02_0981 | Brain | H3.3K27M-KO_BT245-C4P6 | 144 | 4 | 379 | 47 | 1 | 13 | 181 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_103600860 | chr20:46687513-46717026 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 860 | 6 | 786 | 73 | 1 | 20 | 347 | SLC2A10,TP53RK,SLC13A3 |
| SE_02_095900219 | chr20:46687516-46697799 |
Sample_02_0959 | Brain | H3.3K27M_BT245p6_cells | 219 | 3 | 264 | 25 | 1 | 13 | 181 | TP53RK,SLC2A10,SLC13A3 |
| SE_02_125300407 | chr20:46687545-46748590 |
Sample_02_1253 | Mammary gland | CAMA1 ER+/FGFR1-amplified | 407 | 13 | 1711 | 147 | 4 | 45 | 1230 | SLC2A10,TP53RK,SLC13A3 |
| SE_02_046600996 | chr20:46687566-46716003 |
Sample_02_0466 | Adipose | visceral adipocytes | 996 | 11 | 750 | 73 | 1 | 18 | 347 | SLC2A10,TP53RK,SLC13A3 |
| SE_01_006600657 | chr20:46687570-46706305 |
Sample_01_0066 | Smooth muscle | smooth-muscle-cell | 657 | 3 | 499 | 54 | 1 | 13 | 181 | TP53RK,SLC13A3,SLC2A10 |
| SE_02_103500995 | chr20:46687571-46717006 |
Sample_02_1035 | Mammary gland | HCC70_Vehicle | 995 | 7 | 783 | 73 | 1 | 20 | 347 | SLC2A10,TP53RK,SLC13A3 |
| SE_02_096500637 | chr20:46687613-46698038 |
Sample_02_0965 | Brain | H3.3K27M_HSJ031-C3-Rx_cells | 637 | 3 | 268 | 27 | 1 | 13 | 181 | TP53RK,SLC2A10,SLC13A3 |
Genomic distribution of SEs associated with TP53RK