SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000159173
Gene: TNNI1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:201403768-201429866 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002300311 chr1:201375566-201407794 Sample_00_0023 Embryo mesenchymal-stem-cell 311 4 978 58 3 173 2399 TNNI1,TNNT2,LAD1
SE_02_039600388 chr1:201375582-201415398 Sample_02_0396 Skin NHEK-D 388 11 1207 65 3 211 3271 TNNI1,TNNT2,LAD1
SE_02_010500080 chr1:201377023-201408724 Sample_02_0105 Skin neonatal_keratinocytes 80 2 977 54 2 171 2581 TNNI1,TNNT2,LAD1
SE_02_006300232 chr1:201379314-201408677 Sample_02_0063 Skin Keratinocytes 232 3 916 47 1 147 2459 TNNI1,LAD1,TNNT2
SE_02_008100120 chr1:201379434-201409339 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 120 3 928 49 1 147 2589 TNNI1,LAD1,TNNT2
SE_02_098901734 chr1:201379975-201408367 Sample_02_0989 Kidney kidney cortex_WT 1734 6 884 47 1 146 2401 TNNI1,LAD1,TNNT2
SE_02_025700090 chr1:201380772-201408629 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 90 5 869 46 1 145 2417 TNNI1,LAD1,TNNT2
SE_02_003200972 chr1:201381160-201407273 Sample_02_0032 Pancreas pancreatic-islets-M 972 4 801 44 1 143 2084 TNNI1,LAD1,TNNT2
SE_02_103500732 chr1:201381302-201407983 Sample_02_1035 Mammary gland HCC70_Vehicle 732 15 826 45 1 144 2201 TNNI1,LAD1,TNNT2
SE_02_010300354 chr1:201382281-201407389 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 354 4 768 44 1 134 1871 TNNI1,LAD1,TNNT2
SE_02_042800916 chr1:201383316-201408061 Sample_02_0428 Kidney 12364284_VHL- 916 6 761 44 1 127 1767 TNNI1,LAD1,TNNT2
SE_04_000300302 chr1:201383613-201407691 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 302 7 724 43 1 126 1664 TNNI1,LAD1,TNNT2
SE_02_047900795 chr1:201383774-201408351 Sample_02_0479 Head and neck SCC25 795 8 750 45 1 126 1791 TNNI1,LAD1,TNNT2
SE_04_000800303 chr1:201384753-201407839 Sample_04_0008 Lung A549 shRNA control 303 6 699 43 1 126 1548 TNNI1,LAD1,TNNT2
SE_02_005600753 chr1:201385022-201408622 Sample_02_0056 Mammary gland HMEC 753 4 718 44 1 124 1642 TNNI1,LAD1,TNNT2
SE_01_010100766 chr1:201385664-201406210 Sample_01_0101 Pancreas pancreas_54y 766 5 618 37 1 112 1163 TNNI1,LAD1,TNNT2
SE_04_000500352 chr1:201385666-201408298 Sample_04_0005 Lung A549 FOXA2 overexpressed 352 4 686 43 1 124 1534 TNNI1,LAD1,TNNT2
SE_04_000600197 chr1:201385669-201408334 Sample_04_0006 Lung A549 GFP control 197 4 691 44 1 124 1545 TNNI1,LAD1,TNNT2
SE_02_047700215 chr1:201385684-201408385 Sample_02_0477 Colon intestinal epithelial organoids_139a 215 3 690 44 1 124 1554 TNNI1,LAD1,TNNT2
SE_02_021600909 chr1:201385708-201407319 Sample_02_0216 Skin NHEK_scramble 909 3 646 42 1 121 1341 TNNI1,LAD1,TNNT2
SE_02_103600783 chr1:201388209-201408016 Sample_02_1036 Mammary gland HCC70_XY018 783 8 577 40 1 103 1143 TNNI1,LAD1,TNNT2
SE_02_035400461 chr1:201391098-201408564 Sample_02_0354 Colon Colo205 461 3 514 39 0 99 1123 TNNI1,LAD1,TNNT2
SE_02_082601171 chr1:201391264-201406676 Sample_02_0826 Stomach gastric tumor 1171 12 441 33 0 87 713 TNNI1,LAD1,TNNT2
SE_02_047500879 chr1:201391993-201407564 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 879 4 450 35 0 99 882 TNNI1,LAD1,TNNT2
SE_01_010700732 chr1:201392065-201408413 Sample_01_0107 Esophagus esophagus squamous epithelium 732 8 483 37 0 99 1049 TNNI1,LAD1,TNNT2
SE_02_023700206 chr1:201392250-201408911 Sample_02_0237 Colon V389 206 3 494 38 0 99 1145 TNNI1,LAD1,TNNT2
SE_00_002000279 chr1:201392829-201407948 Sample_00_0020 Large intestine large-intestine_108d 279 3 441 34 0 99 954 TNNI1,LAD1,TNNT2
SE_02_136500903 chr1:201393986-201408298 Sample_02_1365 Pancreas AsPC1-untreated 903 7 422 32 0 99 1019 TNNI1,LAD1,TNNT2
SE_02_125801062 chr1:201394068-201408305 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 1062 5 421 32 0 99 1023 TNNI1,LAD1,TNNT2
SE_00_001100838 chr1:201394181-201408616 Sample_00_0011 Esophagus esophagus 838 4 431 33 0 99 1087 TNNI1,LAD1,TNNT2
SE_02_071100761 chr1:201394261-201407116 Sample_02_0711 Pancreas hN35_organoid 761 7 370 30 0 97 797 TNNI1,LAD1,TNNT2
SE_02_024200801 chr1:201394557-201408663 Sample_02_0242 Colon V481 801 2 415 31 0 96 1095 TNNI1,LAD1,TNNT2
SE_02_047800222 chr1:201394661-201408304 Sample_02_0478 Colon normal colon mucosa 222 3 397 30 0 96 1022 TNNI1,LAD1,TNNT2
SE_02_081900234 chr1:201394699-201408356 Sample_02_0819 Ovary Mucinous ovarian cancer 234 2 400 31 0 96 1037 TNNI1,LAD1,TNNT2
SE_02_024100562 chr1:201394831-201407851 Sample_02_0241 Colon V456 562 5 373 29 0 96 938 TNNI1,LAD1,TNNT2
SE_02_088400747 chr1:201394910-201408382 Sample_02_0884 Colon LoVo 747 3 395 31 0 95 1042 TNNI1,LAD1,TNNT2
SE_02_152300627 chr1:201395009-201408291 Sample_02_1523 Lung A549 DMSO 627 5 387 30 0 92 1018 TNNI1,LAD1,TNNT2
SE_01_007900379 chr1:201395577-201408104 Sample_01_0079 Peyers patch Peyers-patch 379 2 363 25 0 88 969 TNNI1,LAD1,TNNT2
SE_00_003600259 chr1:201395581-201407845 Sample_00_0036 Small intestine small-intestine_108days 259 2 350 24 0 88 938 TNNI1,LAD1,TNNT2
SE_01_007100424 chr1:201395621-201406113 Sample_01_0071 Pancreas body-of-pancreas 424 2 295 19 0 76 636 TNNI1,LAD1,TNNT2
SE_02_067200958 chr1:201395716-201407019 Sample_02_0672 Endometrium endometrium cancer_DSG 958 5 314 23 0 85 774 TNNI1,LAD1,TNNT2
SE_02_067400900 chr1:201395728-201406089 Sample_02_0674 Endometrium E1_FA 900 4 290 19 0 76 628 TNNI1,LAD1,TNNT2
SE_00_003500511 chr1:201395794-201407878 Sample_00_0035 Sigmoid colon sigmoid-colon 511 3 344 24 0 88 942 TNNI1,LAD1,TNNT2
SE_02_071000712 chr1:201395819-201407549 Sample_02_0710 Pancreas hN34_organoid 712 6 329 24 0 88 880 TNNI1,LAD1,TNNT2
SE_02_023600707 chr1:201395904-201407640 Sample_02_0236 Colon V206 707 5 329 24 0 88 895 TNNI1,LAD1,TNNT2
SE_00_004900218 chr1:201395904-201407872 Sample_00_0049 Small intestine small intestine 30y 218 6 339 24 0 88 941 TNNI1,LAD1,TNNT2
SE_00_003000408 chr1:201396932-201405356 Sample_00_0030 Pancreas pancreas 408 2 243 16 0 47 466 TNNI1,LAD1,TNNT2
SE_02_092500407 chr1:201401361-201436263 Sample_02_0925 Heart fetal heart_PCW17_12570 407 13 1030 45 0 143 2165 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_074600289 chr1:201405097-201436280 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 289 14 931 37 0 131 1943 TNNI1,TNNT2,LAD1,PHLDA3
SE_01_002300352 chr1:201405688-201427460 Sample_01_0023 Embryo cardiac-muscle-cell 352 4 673 22 0 113 1551 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_074500390 chr1:201405806-201427241 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 390 10 665 22 0 108 1492 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_074400463 chr1:201408526-201427080 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 463 4 574 15 0 92 970 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_092100740 chr1:201413744-201421761 Sample_02_0921 Heart embryonic heart_CS22 740 1 264 7 0 29 369 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_092301016 chr1:201416419-201423371 Sample_02_0923 Heart fetal heart_PCW10_12522 1016 1 228 5 0 37 219 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_074700754 chr1:201416545-201424315 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 754 1 256 6 0 37 219 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_036600420 chr1:201416779-201431905 Sample_02_0366 Skeletal muscle NCI0082 420 2 475 17 0 56 563 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_074100092 chr1:201417420-201426526 Sample_02_0741 Muscle RH30 92 1 278 5 0 39 151 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_084001408 chr1:201417728-201431756 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1408 6 415 15 0 55 464 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_037400153 chr1:201417922-201432122 Sample_02_0374 Skeletal muscle RMS209 153 3 420 16 0 52 423 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_037200569 chr1:201418294-201427776 Sample_02_0372 Skeletal muscle RMS008 569 2 278 6 0 49 144 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_036900711 chr1:201418900-201427317 Sample_02_0369 Skeletal muscle RD 711 2 242 6 0 49 119 TNNI1,TNNT2,LAD1,PHLDA3
SE_02_037900711 chr1:201418900-201427317 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 711 2 242 6 0 49 119 TNNI1,TNNT2,LAD1,PHLDA3
SE_01_011500824 chr1:201419023-201425196 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 824 1 175 4 0 35 67 TNNI1,TNNT2,LAD1,PHLDA3
Genomic distribution of SEs associated with TNNI1
Genome Browser

The strength of the tissue affected by the gene

Expression of TNNI1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)