SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000125247
Gene: TMTC4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr13:100603625-100675093 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_117300433 chr13:100629127-100674305 Sample_02_1173 Brain GBM01 433 28 1315 175 2 179 778 TMTC4,NALCN-AS1,GGACT
SE_02_119600469 chr13:100629374-100675821 Sample_02_1196 Brain GBM32 469 28 1353 181 2 199 933 TMTC4,NALCN-AS1,GGACT
SE_02_120300315 chr13:100629376-100674198 Sample_02_1203 Brain NB1 315 22 1304 171 2 179 778 TMTC4,NALCN-AS1,GGACT
SE_02_120500323 chr13:100629385-100674926 Sample_02_1205 Brain NB3 323 27 1314 175 2 190 899 TMTC4,NALCN-AS1,GGACT
SE_02_120400339 chr13:100629744-100674192 Sample_02_1204 Brain NB2 339 21 1286 171 2 179 778 TMTC4,NALCN-AS1,GGACT
SE_02_119800432 chr13:100630188-100674231 Sample_02_1198 Brain GBM34 432 30 1276 166 2 179 778 TMTC4,NALCN-AS1,GGACT
SE_02_121100573 chr13:100630385-100668905 Sample_02_1211 Brain GBM21 573 19 1099 138 1 162 688 TMTC4,NALCN-AS1,GGACT
SE_02_096600233 chr13:100630460-100675598 Sample_02_0966 Brain H3.3K27M_JN29-BS3 233 15 1312 173 2 199 933 TMTC4,NALCN-AS1,GGACT
SE_02_121300402 chr13:100632099-100674238 Sample_02_1213 Brain GBM31 402 21 1235 155 2 175 778 TMTC4,NALCN-AS1,GGACT
SE_02_100000114 chr13:100633742-100673338 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 114 10 1164 142 2 160 778 TMTC4,NALCN-AS1,GGACT
SE_02_101300278 chr13:100634879-100672518 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 278 22 1102 128 2 156 755 TMTC4,NALCN-AS1,GGACT
SE_02_100900190 chr13:100634917-100673029 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 190 12 1116 131 2 156 752 TMTC4,NALCN-AS1,GGACT
SE_02_129200455 chr13:100643832-100650995 Sample_02_1292 Lung JHU-LX110-SCLC PDX 455 4 208 21 1 31 0 TMTC4
SE_02_035000412 chr13:100644351-100675555 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 412 10 929 121 2 129 518 TMTC4
SE_02_141001688 chr13:100646556-100675563 Sample_02_1410 Brain GSC6 1688 7 860 114 2 116 518 TMTC4,NALCN-AS1
SE_02_059401028 chr13:100650523-100676035 Sample_02_0594 iPSC-derived neural progenitors 1028 4 770 108 1 106 518 TMTC4,NALCN-AS1
SE_02_138800927 chr13:100665252-100674947 Sample_02_1388 Peripheral blood JB6_ALK+ 927 2 287 35 1 53 267 TMTC4,NALCN-AS1
SE_02_079300494 chr13:100665803-100670967 Sample_02_0793 Brain MES20 494 2 162 14 0 26 140 TMTC4,NALCN-AS1
Genomic distribution of SEs associated with TMTC4
Genome Browser

The strength of the tissue affected by the gene

Expression of TMTC4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)