SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000065717
Gene: TLE2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:2997639-3047635 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_003100518 chr19:2944039-2998206 Sample_00_0031 Placenta placenta 518 8 2043 163 1 27 1762 ZNF77,TLE2,TLE6,ZNF57,AES,ZNF554,ZNF556
SE_02_110800193 chr19:2949064-3006627 Sample_02_1108 Brain SK-N-BE_2_-C 193 15 2177 176 3 56 2129 MIR1268A,TLE6,TLE2,ZNF57,ZNF77
SE_02_078000364 chr19:2949277-2998232 Sample_02_0780 Liver SMMC-7721 364 6 1860 159 1 27 1629 TLE2,TLE6,ZNF57,ZNF77
SE_02_116200275 chr19:2949707-3009091 Sample_02_1162 Stomach YCC11 275 22 2244 178 3 66 2283 MIR1268A,TLE6,TLE2,ZNF57,ZNF77
SE_02_093000116 chr19:2949762-2998187 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 116 27 1847 158 1 27 1629 TLE2,TLE6,ZNF57,ZNF77,AES,ZNF556,ZNF554
SE_02_092900100 chr19:2949898-2998023 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 100 31 1829 157 1 27 1611 TLE2,TLE6,ZNF57,ZNF77,AES,ZNF556,ZNF554
SE_02_138500232 chr19:2982674-3068466 Sample_02_1385 Other iPSCs 232 15 3043 203 6 201 5182 AES,MIR1268A,TLE6,TLE2,GNA11,ZNF77
SE_02_148100623 chr19:3002677-3046938 Sample_02_1481 Bone MIC 623 11 1489 78 5 127 2213 TLE2,MIR1268A,TLE6,AES,GNA11
SE_02_148500218 chr19:3002815-3066212 Sample_02_1485 Bone SK-ES-1 218 14 2090 133 5 169 3823 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_104700184 chr19:3003299-3081788 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 184 39 2579 152 5 169 3823 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_039600341 chr19:3004905-3080110 Sample_02_0396 Skin NHEK-D 341 14 2477 145 5 169 3823 TLE2,AES,GNA11,TLE6
SE_02_104602303 chr19:3010873-3044514 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2303 8 1124 50 3 83 1546 TLE2,MIR1268A,TLE6,AES,GNA11
SE_02_055300046 chr19:3011430-3076056 Sample_02_0553 Other HSSY2 shCt 46 28 2096 121 3 115 3129 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_147900138 chr19:3013386-3075855 Sample_02_1479 Bone EW-7 138 24 2012 119 2 115 3129 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_122900274 chr19:3017173-3074015 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 274 30 1841 114 2 106 2817 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_01_008800548 chr19:3018912-3064262 Sample_01_0088 Tibial nerve tibial-nerve 548 8 1425 87 2 106 2739 TLE2,AES,GNA11,TLE6
SE_02_103601383 chr19:3019203-3054289 Sample_02_1036 Mammary gland HCC70_XY018 1383 6 1087 59 2 91 1555 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_120100151 chr19:3019505-3075706 Sample_02_1201 Brain GBM37 151 13 1775 114 2 91 2627 AES,MIR1268A,TLE2,TLE6,GNA11
SE_04_000100314 chr19:3021883-3090837 Sample_04_0001 Blood heat shocked K562 314 10 2208 129 1 87 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,NCLN,ZNF77
SE_04_000200597 chr19:3022545-3076161 Sample_04_0002 Blood cold shocked K562 597 10 1664 110 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_02_113000212 chr19:3022637-3074186 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 212 19 1614 109 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_02_116200674 chr19:3023246-3082219 Sample_02_1162 Stomach YCC11 674 23 1851 116 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_031200661 chr19:3024086-3076607 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 661 9 1637 111 1 83 2516 TLE2,AES,GNA11,TLE6
SE_02_027700196 chr19:3024282-3063950 Sample_02_0277 Retina FW18 196 5 1223 78 1 83 2516 TLE2,AES,GNA11,TLE6
SE_02_027500370 chr19:3024315-3068718 Sample_02_0275 Retina FW14 370 5 1387 98 1 83 2516 TLE2,AES,GNA11,TLE6
SE_02_004400107 chr19:3024470-3048102 Sample_02_0044 Embryo endodermal CyT49_ES_D5 107 5 710 39 1 41 998 TLE2,AES,GNA11,TLE6
SE_02_004300142 chr19:3024495-3048498 Sample_02_0043 Embryo endodermal CyT49_ES_D2 142 7 715 39 1 41 998 TLE2,AES,GNA11,TLE6
SE_02_129200038 chr19:3024538-3076705 Sample_02_1292 Lung JHU-LX110-SCLC PDX 38 16 1626 109 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_075201033 chr19:3024552-3057596 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1033 7 1017 61 1 74 1941 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_075501121 chr19:3024565-3057975 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1121 6 1032 61 1 77 2020 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_068600147 chr19:3024704-3076841 Sample_02_0686 Lung NCI-H128_no infection 147 12 1623 109 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11
SE_01_003700600 chr19:3024832-3066660 Sample_01_0037 Liver hepatocyte 600 5 1303 94 1 83 2508 TLE2,AES,GNA11,TLE6
SE_02_055800297 chr19:3024871-3057785 Sample_02_0558 iPSCs FX52 iPSCs mock 297 10 1022 61 1 77 1964 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_074300345 chr19:3024953-3058731 Sample_02_0743 Embryo ES derived mesoderm_day2 345 9 1043 61 1 80 1988 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_004600503 chr19:3024967-3048281 Sample_02_0046 Embryo endodermal CyT49_ES_D10 503 7 697 38 1 41 958 TLE2,AES,GNA11,TLE6
SE_02_043600067 chr19:3025021-3077182 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 67 10 1621 108 1 83 2450 TLE2,AES,GNA11,TLE6
SE_02_075300126 chr19:3025030-3066946 Sample_02_0753 Embryo ES-derived progenitors_FG type 126 9 1300 93 1 83 2449 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_078000446 chr19:3025103-3068439 Sample_02_0780 Liver SMMC-7721 446 9 1349 95 1 83 2439 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_043500190 chr19:3025141-3058339 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 190 4 1025 61 1 77 1937 TLE2,AES,GNA11,TLE6
SE_02_049401143 chr19:3025177-3037304 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1143 3 386 23 1 41 741 TLE2,MIR1268A,TLE6,AES
SE_02_045300202 chr19:3025350-3077349 Sample_02_0453 Neuroblastoma SJNB3 202 10 1614 108 1 83 2384 AES,MIR1268A,TLE2,TLE6,GNA11
SE_02_110500786 chr19:3029390-3037365 Sample_02_1105 Brain NBL-S 786 1 242 18 1 26 110 TLE2,MIR1268A,AES
SE_02_103200184 chr19:3031321-3092305 Sample_02_1032 Head and neck SCC1 JQ1 184 23 1949 114 0 71 1681 TLE2,AES,MIR1268A,GNA11,GNA15
SE_02_103100367 chr19:3032314-3072805 Sample_02_1031 Head and neck SCC1 contol 367 12 1242 86 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_004900405 chr19:3033330-3037992 Sample_02_0049 Embryo endodermal CyT49_GTtoH 405 1 134 7 0 25 0 TLE2,AES
SE_02_102900791 chr19:3033380-3075777 Sample_02_1029 Colon HCT116 791 17 1300 88 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_004800479 chr19:3033395-3037123 Sample_02_0048 Embryo endodermal CyT49_HE 479 1 103 6 0 25 0 TLE2,AES
SE_01_006900332 chr19:3033462-3068683 Sample_01_0069 Adrenal gland adrenal-gland 332 7 1070 79 0 67 1681 TLE2,AES,GNA11
SE_02_153900781 chr19:3033546-3057637 Sample_02_1539 Nasopharyngeal C666-1 781 10 717 43 0 58 1118 TLE2,AES,MIR1268A,GNA11
SE_02_003801778 chr19:3033612-3037137 Sample_02_0038 Embryo DE 1778 1 95 6 0 25 0 TLE2,AES
SE_01_007200524 chr19:3033631-3066292 Sample_01_0072 Breast epithelium breast-epithelium 524 5 985 74 0 67 1681 TLE2,AES,GNA11
SE_02_028400453 chr19:3033768-3076830 Sample_02_0284 Pelvis patient 119 453 12 1316 91 0 67 1681 TLE2,AES,GNA11
SE_02_063300399 chr19:3033864-3066014 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 399 9 969 73 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_01_009100302 chr19:3033936-3063766 Sample_01_0091 Uterus uterus 302 5 886 57 0 67 1681 TLE2,AES,GNA11
SE_02_155900613 chr19:3033990-3060713 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 613 9 792 47 0 64 1185 TLE2,AES,MIR1268A,GNA11
SE_01_008400584 chr19:3034007-3068579 Sample_01_0084 Spleen spleen 584 7 1048 78 0 67 1681 TLE2,AES,GNA11
SE_01_008000299 chr19:3034082-3063601 Sample_01_0080 Prostate prostate 299 4 877 56 0 67 1681 TLE2,AES,GNA11
SE_02_022800370 chr19:3034137-3063768 Sample_02_0228 Oesophagus KYSE510 370 6 878 56 0 67 1681 TLE2,AES,GNA11
SE_00_005100303 chr19:3034279-3074001 Sample_00_0051 Adrenal gland adrenal gland 30y 303 22 1222 86 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_148000750 chr19:3034290-3046939 Sample_02_1480 Bone MHH-ES-1 750 8 350 17 0 25 71 TLE2,MIR1268A,AES,GNA11
SE_01_008900587 chr19:3034312-3064078 Sample_01_0089 Transverse colon transverse-colon 587 4 881 57 0 67 1681 TLE2,AES,GNA11
SE_02_030700224 chr19:3034370-3074385 Sample_02_0307 Neuroblastoma SJNB12 224 6 1226 86 0 67 1681 TLE2,AES,GNA11
SE_02_147500825 chr19:3034430-3074205 Sample_02_1475 Bone CHLA-25 825 12 1225 86 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_050600288 chr19:3034494-3076097 Sample_02_0506 Esophagus TE5_1 288 9 1267 86 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_051700280 chr19:3034495-3081771 Sample_02_0517 Esophagus TE5 280 11 1459 93 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_156000721 chr19:3034525-3080709 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 721 9 1425 91 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_01_009200336 chr19:3034539-3080292 Sample_01_0092 Vagina vagina 336 8 1411 91 0 67 1681 TLE2,AES,GNA11
SE_01_010700489 chr19:3034626-3063737 Sample_01_0107 Esophagus esophagus squamous epithelium 489 6 866 55 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_01_007800725 chr19:3034657-3064143 Sample_01_0078 Heart left ventricle heart-left-ventricle 725 4 875 57 0 67 1681 TLE2,AES,GNA11
SE_02_155400806 chr19:3034687-3068374 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 806 8 1023 74 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_046200041 chr19:3034724-3077480 Sample_02_0462 Lung NCI-H2171 cells 41 21 1301 88 0 67 1681 TLE2,AES,MIR1268A,GNA11,S1PR4
SE_02_129000246 chr19:3034730-3076726 Sample_02_1290 Lung NCI-H69_p8-15 246 13 1281 88 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_148900136 chr19:3034758-3046849 Sample_02_1489 Bone TC-106 136 9 336 16 0 25 71 TLE2,MIR1268A,AES,GNA11
SE_02_148200343 chr19:3034786-3073919 Sample_02_1482 Bone POE 343 8 1209 85 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_066900605 chr19:3034791-3060332 Sample_02_0669 Prostate prostate cancer_DSG 605 7 766 44 0 64 1185 TLE2,AES,MIR1268A,GNA11
SE_02_144300163 chr19:3034830-3076964 Sample_02_1443 Lung H69M 163 10 1286 88 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_143200662 chr19:3034894-3075789 Sample_02_1432 Bone A673 STAG2 WT 662 15 1252 85 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_143300391 chr19:3034942-3076099 Sample_02_1433 Bone A673 STAG2 null 391 18 1257 85 0 67 1681 TLE2,AES,MIR1268A,GNA11
SE_02_156500381 chr19:3034973-3058007 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 381 8 687 40 0 61 1185 TLE2,AES,MIR1268A,GNA11
SE_02_064501710 chr19:3035008-3057798 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1710 6 683 40 0 61 1154 TLE2,AES,MIR1268A,GNA11
SE_02_156300129 chr19:3035212-3058022 Sample_02_1563 Gastrointestinal Stromal GIST-12_SDHC deletion 129 7 683 40 0 61 1185 TLE2,AES,MIR1268A,GNA11
SE_02_107000308 chr19:3036039-3054022 Sample_02_1070 Blood SupT1_WT 308 5 515 29 0 34 445 TLE2,AES,MIR1268A,GNA11
SE_02_103502246 chr19:3036258-3057742 Sample_02_1035 Mammary gland HCC70_Vehicle 2246 7 652 40 0 51 1137 TLE2,AES,MIR1268A,GNA11
Genomic distribution of SEs associated with TLE2
Genome Browser

The strength of the tissue affected by the gene

Expression of TLE2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)