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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000070731
Gene: ST6GALNAC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:76565377-76586956 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_029400808 chr17:76555500-76571232 Sample_02_0294 Pancreatic L3-6_DMSO 808 1 531 76 0 38 1006 SNORD1C,SNORD1B,ST6GALNAC2,SNORD1A,PRCD,CYGB
SE_02_155100398 chr17:76556479-76569027 Sample_02_1551 Gastrointestinal Stromal MaMel 398 1 440 65 0 16 911 SNORD1C,SNORD1A,SNHG16,SNORD1B,ST6GALNAC2,CYGB,PRCD
SE_02_040500501 chr17:76562479-76576339 Sample_02_0405 Mammary gland ZR-75-30_KO 501 4 488 66 0 42 1073 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_018300410 chr17:76565454-76574793 Sample_02_0183 Skin SKMEL2 410 1 337 34 0 38 782 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_018400845 chr17:76565543-76571296 Sample_02_0184 Skin SKMEL30 845 1 219 23 0 29 379 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_01_008800933 chr17:76565557-76588639 Sample_01_0088 Tibial nerve tibial-nerve 933 1 751 124 4 52 1062 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_093700828 chr17:76566354-76573073 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 828 1 244 26 0 30 401 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_056600198 chr17:76566527-76588075 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 198 8 693 118 4 48 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_116500112 chr17:76566885-76571673 Sample_02_1165 Testis round spermatids 112 4 174 18 0 26 263 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_080900367 chr17:76566914-76587530 Sample_02_0809 Mammary gland T47D Serum 367 3 673 114 4 48 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_124800389 chr17:76566966-76602554 Sample_02_1248 Bladder RT4 389 6 1168 189 4 54 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_153900506 chr17:76567077-76624037 Sample_02_1539 Nasopharyngeal C666-1 506 15 2109 335 8 54 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,LOC105274304,ST6GALNAC1
SE_02_081000273 chr17:76567133-76586624 Sample_02_0810 Mammary gland T47D noSerum 273 12 634 104 3 48 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_146500367 chr17:76567217-76588406 Sample_02_1465 Ovary CAOV4cis 367 5 678 116 4 49 946 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_075600252 chr17:76567379-76613989 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 252 12 1643 287 5 54 914 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_006800628 chr17:76567694-76576807 Sample_02_0068 Skin A375_DMSO 628 5 305 32 0 38 590 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_103200529 chr17:76568954-76605003 Sample_02_1032 Head and neck SCC1 JQ1 529 10 1148 186 4 50 781 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_149300893 chr17:76569039-76574678 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 893 1 175 20 0 25 480 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_068700959 chr17:76570066-76641448 Sample_02_0687 Lung NCI-H146_no infection 959 15 2510 386 10 59 1596 ST6GALNAC2,ST6GALNAC1,SNORD1A,PRCD,SNORD1B,SNHG16,CYGB,MXRA7,LOC105274304,SNORD1C
SE_02_050400329 chr17:76572806-76614300 Sample_02_0504 Esophagus KYSE510_1 329 18 1513 271 5 24 609 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_149300952 chr17:76574735-76577754 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 952 1 90 15 1 7 0 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_056300262 chr17:76575489-76586641 Sample_02_0563 Mammary gland MCF7L-P_0h 262 1 341 71 3 13 292 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_006300709 chr17:76577488-76587792 Sample_02_0063 Skin Keratinocytes 709 1 321 72 3 9 292 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_010500865 chr17:76577528-76587776 Sample_02_0105 Skin neonatal_keratinocytes 865 1 321 72 3 9 292 ST6GALNAC2,SNORD1A,PRCD,SNORD1B,CYGB,SNORD1C
SE_02_107300820 chr17:76577920-76583809 Sample_02_1073 Keratinocyte keratinocytes stem cell 820 1 200 46 2 1 70 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_064800326 chr17:76578161-76623964 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 326 15 1731 285 5 12 292 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,LOC105274304,SNORD1C,ST6GALNAC1
SE_02_135800532 chr17:76578181-76603134 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 532 10 806 140 1 12 292 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_135700659 chr17:76578204-76602778 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 659 11 789 139 1 12 292 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_135900674 chr17:76578257-76603024 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 674 11 800 139 1 12 292 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_064700240 chr17:76578680-76613955 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 240 11 1262 239 2 12 275 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_065200209 chr17:76578696-76613795 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 209 12 1238 238 2 12 273 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_03_000300154 chr17:76579154-76602820 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 154 5 762 137 1 12 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,ST6GALNAC1,PRCD,SNORD1C
SE_02_154000471 chr17:76579454-76603360 Sample_02_1540 Nasopharyngeal HK1 471 9 770 138 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_103700566 chr17:76579468-76603295 Sample_02_1037 Pharynx FaDu Control 566 8 769 138 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_113100305 chr17:76579767-76613660 Sample_02_1131 Pancreas T3M4 wt 305 13 1191 234 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_154100624 chr17:76579832-76623978 Sample_02_1541 Nasopharyngeal HNE1 624 10 1673 280 5 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,LOC105274304,SNORD1C,ST6GALNAC1
SE_02_136200694 chr17:76579901-76614317 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 694 10 1276 239 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_102600265 chr17:76580259-76613430 Sample_02_1026 Esophagus KYSE200 265 12 1158 230 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_136100976 chr17:76580280-76614265 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 976 17 1253 238 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_102500300 chr17:76580340-76624050 Sample_02_1025 Esophagus KYSE150 300 10 1659 280 5 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,LOC105274304,SNORD1C,ST6GALNAC1
SE_02_103100280 chr17:76580356-76633475 Sample_02_1031 Head and neck SCC1 contol 280 22 1968 313 7 37 979 ST6GALNAC2,ST6GALNAC1,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,LOC105274304,SNORD1C
SE_02_102700249 chr17:76580373-76598584 Sample_02_1027 Esophagus KYSE180_1 249 5 573 101 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_049101107 chr17:76580411-76603304 Sample_02_0491 Pharyng Detroit 562-Control 1107 5 732 134 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_094500085 chr17:76580464-76602531 Sample_02_0945 Brain SF767 85 8 711 133 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_022800436 chr17:76580466-76614150 Sample_02_0228 Oesophagus KYSE510 436 7 1233 236 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,ST6GALNAC1,PRCD,SNORD1C
SE_02_136600495 chr17:76580476-76611077 Sample_02_1366 Pancreas BxPC3-untreated 495 10 1039 217 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_113200074 chr17:76580551-76671736 Sample_02_1132 Pancreas KLM1 wt 74 24 3055 483 7 37 1145 ST6GALNAC1,ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,MXRA7,LOC105274304,SNORD1C
SE_02_071201416 chr17:76580635-76602743 Sample_02_0712 Pancreas BxPC3_sgNEG 1416 7 707 128 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_075200194 chr17:76580668-76613319 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 194 8 1137 221 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_075500184 chr17:76580756-76613861 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 184 8 1174 223 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_136000645 chr17:76580768-76614268 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 645 11 1236 227 2 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_094800708 chr17:76580816-76603363 Sample_02_0948 Pharyng Detroit562 708 5 717 124 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_112100441 chr17:76580901-76602832 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 441 7 697 122 1 11 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C,ST6GALNAC1
SE_02_125400526 chr17:76583110-76587473 Sample_02_1254 Bladder Bladder tumor Basal1 526 1 123 29 1 5 222 ST6GALNAC2,SNORD1A,CYGB,SNORD1B,SNHG16,PRCD,SNORD1C
SE_02_039601406 chr17:76583982-76587537 Sample_02_0396 Skin NHEK-D 1406 1 101 21 1 5 222 ST6GALNAC2,SNORD1A,SNORD1B,CYGB,PRCD,SNORD1C
Genomic distribution of SEs associated with ST6GALNAC2
Genome Browser

The strength of the tissue affected by the gene

Expression of ST6GALNAC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)