SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: SNORD47 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_021200033 chr1:173851236-173869628 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 33 1 484 66 1 77 933 SNORD81,DARS2,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,CENPL,SERPINC1
SE_02_101701670 chr1:173860200-173869537 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1670 1 303 44 0 63 676 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_157000648 chr1:173861190-173868105 Sample_02_1570 iPSCs EiPSC 648 1 243 35 0 18 444 SNORD79,SNORD76,SNORD80,SNORD77,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,ZBTB37,DARS2,CENPL,SERPINC1
SE_02_004200245 chr1:173861412-173869509 Sample_02_0042 Embryo endodermal CyT49_ES_D0 245 1 276 39 0 63 676 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_016800593 chr1:173861512-173871416 Sample_02_0168 Prostate LNCaP 593 1 317 47 0 86 837 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_156700631 chr1:173861600-173868020 Sample_02_1567 iPSCs CiPSC 631 1 228 35 0 13 432 SNORD79,SNORD76,SNORD80,SNORD77,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,ZBTB37,DARS2,CENPL,SERPINC1
SE_02_157200684 chr1:173861741-173868004 Sample_02_1572 iPSCs FiPSC 684 1 225 35 0 13 430 SNORD79,SNORD76,SNORD80,SNORD77,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,ZBTB37,DARS2,CENPL,SERPINC1
SE_02_003600771 chr1:173861760-173869489 Sample_02_0036 Embryo H7 771 1 266 39 0 63 676 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_04_000200549 chr1:173862027-173872529 Sample_04_0002 Blood cold shocked K562 549 1 338 50 0 88 837 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_153200438 chr1:173862337-173869913 Sample_02_1532 Mammary gland MCF10A 438 1 261 36 0 63 676 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_003801390 chr1:173862434-173869529 Sample_02_0038 Embryo DE 1390 1 244 32 0 63 676 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_033000854 chr1:173862498-173869621 Sample_02_0330 Endoderm MHG 854 1 246 31 0 63 676 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_116100190 chr1:173862582-173867958 Sample_02_1161 Embryo H1_shZNF587 190 1 191 25 0 13 425 SNORD79,SNORD76,SNORD81,SNORD77,SNORD80,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,ZBTB37,DARS2,CENPL,SERPINC1
SE_02_066000583 chr1:173862582-173870570 Sample_02_0660 Mammary gland MCF10DCIS 583 1 268 36 0 71 735 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_01_001200618 chr1:173862840-173870120 Sample_01_0012 Lung A549_dexamethasone_1h 618 1 253 32 0 64 684 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,LOC100506046,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_152201013 chr1:173863467-173871931 Sample_02_1522 Skin A375 RTKi 1013 1 269 34 0 88 787 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_113600790 chr1:173863756-173869739 Sample_02_1136 Bone U2OS-anaphase/telophase 790 1 203 22 0 63 596 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_04_000101205 chr1:173863861-173871607 Sample_04_0001 Blood heat shocked K562 1205 1 247 28 0 88 753 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_02_113800649 chr1:173863895-173869666 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 649 1 198 21 0 63 590 SNORD79,SNORD76,SNORD80,SNORD77,ZBTB37,SNORD81,SNORD47,GAS5,GAS5-AS1,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1
SE_00_001300408 chr1:173864014-173868634 Sample_00_0013 Embryo H9 408 1 175 18 0 42 496 SNORD80,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD47,GAS5,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,LOC100506046,DARS2,CENPL,SERPINC1
SE_02_111600782 chr1:173864076-173871794 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 782 1 247 30 0 88 731 SNORD79,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD80,SNORD47,GAS5,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1,GAS5-AS1
SE_02_113900953 chr1:173864108-173869312 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 953 1 183 19 0 63 569 SNORD79,SNORD76,SNORD81,SNORD77,ZBTB37,SNORD80,SNORD47,GAS5,SNORD78,SNORD75,SNORD74,SNORD44,DARS2,CENPL,SERPINC1,GAS5-AS1
SE_02_032800572 chr1:173864417-173869485 Sample_02_0328 Embryo H9_naive 572 1 182 20 0 62 551 SNORD76,SNORD80,SNORD77,ZBTB37,SNORD47,GAS5,SNORD78,SNORD79,SNORD75,SNORD74,SNORD44,LOC100506046,DARS2,CENPL,SNORD81,SERPINC1
Genomic distribution of SEs associated with SNORD47
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD47

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)