SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000092531
Gene: SNAP23 Gene type: protein_coding
Strand: + External links:
Genomic region: chr15:42491233-42545356 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_091300325 chr15:42413677-42511874 Sample_02_0913 Heart left ventricle_DCM_LV1304 325 26 2528 240 7 31 1897 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_090100434 chr15:42444034-42511602 Sample_02_0901 Heart left ventricle_LV1471 434 24 1719 165 7 0 811 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_090300426 chr15:42447274-42511696 Sample_02_0903 Heart left ventricle_DCM_LV1009 426 17 1665 162 7 0 667 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_130200233 chr15:42453102-42518729 Sample_02_1302 Lymphoma RL DMSO 233 22 1687 165 6 0 444 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_078100609 chr15:42453163-42511364 Sample_02_0781 Lymphoma Pfeiffer_DMSO 609 13 1509 153 6 0 303 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_098901000 chr15:42453621-42506317 Sample_02_0989 Kidney kidney cortex_WT 1000 11 1387 148 5 0 303 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_130400371 chr15:42453907-42512151 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 371 13 1511 152 6 0 332 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_115500392 chr15:42453927-42511521 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 392 9 1499 152 6 0 303 ZNF106,SNAP23,LRRC57,CAPN3,HAUS2
SE_02_142901255 chr15:42461207-42506554 Sample_02_1429 Blood GM12878_WT 1255 10 1192 129 5 0 207 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_104701748 chr15:42466779-42528916 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1748 13 1594 161 7 0 359 ZNF106,SNAP23,LRRC57,STARD9,HAUS2
SE_02_104901726 chr15:42466845-42512746 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1726 15 1169 121 6 0 199 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_111100421 chr15:42471226-42512896 Sample_02_1111 Other HGrC1_SMAD2/3KO 421 17 1040 106 6 0 218 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_153000962 chr15:42488174-42512582 Sample_02_1530 Peripheral blood neutrophils_0BA0X 962 10 586 57 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_152901062 chr15:42488358-42512309 Sample_02_1529 Peripheral blood neutrophils_0BC75 1062 6 576 57 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_116900863 chr15:42488875-42511021 Sample_02_1169 Biliary H69_TGF beta_16h_2 863 6 547 57 3 0 133 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_143701181 chr15:42489364-42512918 Sample_02_1437 Liver LSEC-TNF 1181 8 575 59 3 0 182 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_087800346 chr15:42489626-42512274 Sample_02_0878 Ovary SVOG3e cells_noDox_control 346 6 549 57 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_088300379 chr15:42489669-42512115 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 379 7 546 57 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_01_008501297 chr15:42489693-42512195 Sample_01_0085 Stomach stomach 1297 4 546 57 3 0 162 SNAP23,LRRC57,HAUS2,ZFP106
SE_01_009000595 chr15:42489694-42512363 Sample_01_0090 Lung upper-lobe-of-left-lung 595 6 548 57 3 0 162 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_088200345 chr15:42489732-42511807 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 345 7 534 57 3 0 141 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_143601132 chr15:42489749-42512884 Sample_02_1436 Liver LSEC-Ctrl 1132 14 558 59 3 0 180 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_028800320 chr15:42489845-42506344 Sample_02_0288 Tonsil CB5_H3K27Ac 320 3 413 52 2 0 133 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_017200632 chr15:42489909-42512575 Sample_02_0172 Lung IMR-90_quiescent 632 5 549 57 3 0 162 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_017100641 chr15:42489928-42513606 Sample_02_0171 Lung IMR-90_proliferating 641 6 571 59 3 0 235 SNAP23,LRRC57,HAUS2,ZFP106
SE_01_003701105 chr15:42489990-42509244 Sample_01_0037 Liver hepatocyte 1105 3 477 55 3 0 133 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_147100516 chr15:42490022-42510492 Sample_02_1471 Blood Outgrowth Endothelia BOEC 516 6 504 55 3 0 133 ZNF106,SNAP23,HAUS2,LRRC57
SE_00_002001460 chr15:42490048-42505921 Sample_00_0020 Large intestine large-intestine_108d 1460 3 395 51 2 0 133 SNAP23,LRRC57,HAUS2,ZFP106
SE_00_003901053 chr15:42490056-42496625 Sample_00_0039 Spleen spleen_3y 1053 2 178 20 2 0 133 SNAP23,ZFP106
SE_02_087900404 chr15:42490070-42512236 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 404 7 537 56 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_001001038 chr15:42490075-42512076 Sample_02_0010 Kidney A-498_emptyvector 1038 6 536 56 3 0 161 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_088100345 chr15:42490090-42512182 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 345 6 536 56 3 0 162 ZNF106,SNAP23,HAUS2,LRRC57
SE_01_002600517 chr15:42490126-42511788 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 517 4 525 56 3 0 141 SNAP23,LRRC57,HAUS2,ZFP106
SE_00_003601529 chr15:42490161-42505792 Sample_00_0036 Small intestine small-intestine_108days 1529 3 388 51 2 0 133 SNAP23,LRRC57,HAUS2,ZFP106
SE_01_004101022 chr15:42490178-42499299 Sample_01_0041 Skin keratinocyte 1022 2 244 30 2 0 133 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_143801177 chr15:42490233-42516549 Sample_02_1438 Liver LSEC 1177 8 631 66 3 0 274 ZNF106,SNAP23,HAUS2,LRRC57
SE_02_017500982 chr15:42490302-42511742 Sample_02_0175 Lung IMR-90_Etoposide 982 6 523 56 3 0 138 SNAP23,LRRC57,HAUS2,ZFP106
SE_02_095001286 chr15:42492744-42511386 Sample_02_0950 Umbilical vein HUVEC_WT 1286 11 454 49 3 0 133 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_156900779 chr15:42492782-42511929 Sample_02_1569 Endothelial Endothelial cells 779 5 463 49 3 0 148 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_094900966 chr15:42492835-42511944 Sample_02_0949 Umbilical artery HUAEC_WT 966 11 464 48 3 0 149 SNAP23,HAUS2,LRRC57,ZNF106
SE_01_010400788 chr15:42492942-42511941 Sample_01_0104 Lung upper lobe of left lung 788 3 463 46 2 0 149 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_066900554 chr15:42492952-42511619 Sample_02_0669 Prostate prostate cancer_DSG 554 7 456 46 2 0 133 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_146000977 chr15:42493007-42511460 Sample_02_1460 Blood Mutz-3 977 7 452 46 2 0 133 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_157301137 chr15:42493080-42511695 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1137 8 455 45 2 0 136 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_093001344 chr15:42493104-42512647 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1344 15 473 46 2 0 162 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_088000803 chr15:42493175-42512317 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 803 6 466 45 2 0 162 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_132801120 chr15:42493208-42512104 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1120 4 461 45 2 0 162 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_146800676 chr15:42493431-42508993 Sample_02_1468 Blood HUDEP-2_WT 676 2 383 43 2 0 133 SNAP23,HAUS2,LRRC57,ZNF106
SE_02_093700894 chr15:42494537-42511822 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 894 4 409 41 2 0 142 SNAP23,HAUS2,LRRC57,ZNF106
Genomic distribution of SEs associated with SNAP23
Genome Browser

The strength of the tissue affected by the gene

Expression of SNAP23

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)