SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000232803
Gene: SLCO4A1-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr20:62663019-62666724 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_085900030 chr20:62587923-62672164 Sample_02_0859 Prostate PC3 30 15 2692 196 4 85 1936 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_157900028 chr20:62588332-62676083 Sample_02_1579 Renal 786-M1A 28 20 2868 211 5 85 1995 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_076200339 chr20:62588781-62676092 Sample_02_0762 Podocyte podocyte_CTL 339 14 2851 207 5 85 1995 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_110700077 chr20:62589865-62678146 Sample_02_1107 Brain SK-N-AS 77 35 2866 202 5 85 1995 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_136700009 chr20:62590611-62669055 Sample_02_1367 Pancreas Capan1-untreated 9 22 2442 171 3 83 1779 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_082600118 chr20:62594487-62668727 Sample_02_0826 Stomach gastric tumor 118 37 2253 151 3 81 1700 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_116200079 chr20:62595507-62669280 Sample_02_1162 Stomach YCC11 79 38 2240 151 3 83 1828 SLCO4A1,SLCO4A1-AS1,MIR1-1,MIR1-1HG,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_104900195 chr20:62600722-62677940 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 195 45 2401 166 5 85 1995 SLCO4A1,SLCO4A1-AS1,MIR1-1,NTSR1,C20ORF166-AS1,MIR133A2
SE_02_046000046 chr20:62601980-62686748 Sample_02_0460 Blood ME-1_I-10-49_6h 46 20 2664 196 8 111 1995 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR1-1,MIR133A2
SE_02_120100142 chr20:62602583-62664708 Sample_02_1201 Brain GBM37 142 15 1777 126 2 63 954 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR1-1,MIR133A2
SE_02_108300133 chr20:62603314-62675938 Sample_02_1083 Macula macula 133 13 2251 155 4 85 1995 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR1-1,MIR133A2
SE_02_108200076 chr20:62603423-62675919 Sample_02_1082 Retina retina 76 10 2246 154 4 85 1995 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR1-1,MIR133A2,DIDO1,COL9A3,MRGBP,GATA5,MIR1-1HG
SE_02_055300196 chr20:62603572-62675571 Sample_02_0553 Other HSSY2 shCt 196 19 2238 153 4 85 1995 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR1-1,MIR133A2
SE_02_155300257 chr20:62605888-62670858 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 257 22 1901 128 4 83 1828 SLCO4A1,SLCO4A1-AS1,NTSR1,MIR133A2
SE_02_138300119 chr20:62617037-62669311 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 119 28 1415 80 2 83 1828 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_138200155 chr20:62617081-62664545 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 155 33 1224 68 1 63 954 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_125800041 chr20:62617137-62668980 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 41 7 1407 78 2 81 1767 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_080800059 chr20:62617323-62672002 Sample_02_0808 Ovary RMG1_ARID1A KO 59 20 1539 84 3 85 1916 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_111200225 chr20:62617848-62699160 Sample_02_1112 T lymphocyte THP-6 T-ALL 225 29 2624 167 9 120 1995 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_054000205 chr20:62617904-62688786 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 205 23 2177 142 7 111 1995 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_053900184 chr20:62618080-62675967 Sample_02_0539 Brain SK-N-BE_2_-C_GFP_control 184 28 1730 100 3 85 1995 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_114200023 chr20:62618177-62675529 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 23 25 1718 98 3 85 1995 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_147600204 chr20:62621912-62669384 Sample_02_1476 Bone EW-1 204 22 1418 72 2 83 1828 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_110600420 chr20:62622810-62697530 Sample_02_1106 Brain NGP 420 38 2558 157 9 117 1995 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_104301465 chr20:62636505-62663491 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1465 9 1034 42 1 62 928 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_105500039 chr20:62641405-62668683 Sample_02_1055 Esophagus KYAE1 39 5 1091 46 2 67 1690 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_070300185 chr20:62641506-62669140 Sample_02_0703 Pancreas PATU8988S WT 185 4 1102 46 2 70 1803 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_081900193 chr20:62641607-62668843 Sample_02_0819 Ovary Mucinous ovarian cancer 193 5 1089 46 2 68 1723 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_050500764 chr20:62641644-62669431 Sample_02_0505 Esophagus KYSE70_1 764 6 1103 47 2 70 1828 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_051600763 chr20:62641644-62669431 Sample_02_0516 Esophagus KYSE70 763 6 1103 47 2 70 1828 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_137100042 chr20:62641680-62669035 Sample_02_1371 Pancreas Patu899S-untreated 42 7 1092 46 2 70 1776 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_136500303 chr20:62641695-62669176 Sample_02_1365 Pancreas AsPC1-untreated 303 8 1095 46 2 70 1807 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_066000852 chr20:62641739-62669232 Sample_02_0660 Mammary gland MCF10DCIS 852 10 1096 47 2 70 1812 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_137000340 chr20:62641771-62664775 Sample_02_1370 Pancreas Patu8902-untreated 340 11 915 36 1 50 962 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_125400558 chr20:62641908-62663044 Sample_02_1254 Bladder Bladder tumor Basal1 558 5 843 34 1 50 860 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_105100165 chr20:62642474-62667137 Sample_02_1051 Esophagus Eso26 165 10 988 38 1 55 1391 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_071800277 chr20:62642540-62669054 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 277 8 1063 44 2 67 1682 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_088600340 chr20:62642704-62676372 Sample_02_0886 Skin foreskin_ p63KLF4 340 6 1399 68 4 68 1844 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_137200306 chr20:62643982-62687206 Sample_02_1372 Pancreas PSN1-untreated 306 10 1733 102 7 94 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_044801043 chr20:62644015-62689640 Sample_02_0448 Bone MNNG 1043 16 1830 107 7 94 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_00_005600672 chr20:62644489-62668711 Sample_00_0056 Sigmoid colon sigmoid colon 3y 672 9 998 43 2 62 1540 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_152900475 chr20:62644680-62698095 Sample_02_1529 Peripheral blood neutrophils_0BC75 475 22 2177 132 9 99 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_153000673 chr20:62644730-62688864 Sample_02_1530 Peripheral blood neutrophils_0BA0X 673 18 1769 107 7 92 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_098200032 chr20:62645842-62705002 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 32 16 2424 145 10 109 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_096200035 chr20:62646040-62724056 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 35 24 3078 200 15 151 2192 NTSR1,SLCO4A1,SLCO4A1-AS1
SE_02_104800913 chr20:62646879-62664166 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 913 9 746 31 1 44 797 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_092800492 chr20:62648193-62688543 Sample_02_0928 Peripheral blood neutrophils_Ecoli 492 15 1652 104 7 90 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_114500827 chr20:62648379-62664370 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 827 16 692 29 1 42 797 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_157301331 chr20:62650695-62663270 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1331 4 554 20 1 42 737 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_078800168 chr20:62650773-62704674 Sample_02_0788 Brain 3565 168 9 2218 132 10 102 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_120000869 chr20:62650897-62704641 Sample_02_1200 Brain GBM36 869 13 2211 130 10 102 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_097100194 chr20:62651061-62756784 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 194 20 3995 290 20 178 2317 NTSR1,SLCO4A1,SLCO4A1-AS1,OGFR,OGFR-AS1,LINC00659,MRGBP
SE_02_063000559 chr20:62651169-62670282 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 559 3 810 32 2 62 1671 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_063100476 chr20:62651271-62670244 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 476 4 801 32 2 62 1671 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_084600599 chr20:62651455-62676816 Sample_02_0846 Mammary gland MDA-MB-231_untreat 599 8 1112 55 4 64 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_099100779 chr20:62651505-62689508 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 779 8 1551 94 7 90 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_085600275 chr20:62651526-62704614 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 275 8 2181 130 10 98 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_059400408 chr20:62651608-62745038 Sample_02_0594 iPSC-derived neural progenitors 408 22 3599 271 18 168 2192 NTSR1,SLCO4A1,SLCO4A1-AS1,LINC00659
SE_02_122800890 chr20:62651706-62676273 Sample_02_1228 Mammary gland MDA-MB-231_2 890 8 1082 54 4 60 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_117900317 chr20:62651708-62704599 Sample_02_1179 Brain GBM08 317 13 2176 130 10 98 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_097300377 chr20:62652066-62697740 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 377 9 1892 119 9 93 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_084700198 chr20:62652375-62676194 Sample_02_0847 Mammary gland LM2-4175 198 4 1058 54 4 60 1838 SLCO4A1,SLCO4A1-AS1,NTSR1
SE_02_096000405 chr20:62664303-62670052 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 405 2 220 12 1 20 874 SLCO4A1,SLCO4A1-AS1,NTSR1
Genomic distribution of SEs associated with SLCO4A1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of SLCO4A1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)