SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000146828
Gene: SLC12A9 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:100826820-100867010 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700533 chr7:100785714-100857544 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 533 12 2165 193 4 0 4531 SLC12A9,EPHB4,ZAN,ACHE,MIR6875,SRRT,UFSP1,TRIP6,ACTL6B,TFR2,MUC3A
SE_02_003900403 chr7:100826112-100852813 Sample_02_0039 Embryo AFG 403 5 718 66 0 0 359 EPHB4,SLC12A9,TRIP6,UFSP1,SRRT,ACHE
SE_02_004500233 chr7:100827561-100853163 Sample_02_0045 Embryo endodermal CyT49_ES_D7 233 8 689 63 0 0 207 SLC12A9,TRIP6,EPHB4,UFSP1,SRRT,ACHE
SE_02_021600272 chr7:100854899-100885602 Sample_02_0216 Skin NHEK_scramble 272 7 993 83 6 0 3741 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_035900310 chr7:100862332-100869668 Sample_02_0359 Colon Colo741 310 1 232 20 2 0 1089 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_079500087 chr7:100862416-100869166 Sample_02_0795 Brain 1953 87 3 217 20 2 0 1089 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_028400457 chr7:100863200-100888466 Sample_02_0284 Pelvis patient 119 457 5 864 65 4 0 2847 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_151800410 chr7:100864000-100869328 Sample_02_1518 Umbilical vein HUVEC_Scr 410 3 172 15 2 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_032400088 chr7:100864198-100879398 Sample_02_0324 Colon SW48 88 1 523 43 2 0 1620 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_000200149 chr7:100864257-100872615 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 149 1 275 25 2 0 1262 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_148100917 chr7:100864367-100869712 Sample_02_1481 Bone MIC 917 2 179 15 2 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_035200521 chr7:100864388-100869599 Sample_02_0352 Colon HCT116 521 1 174 14 2 0 984 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_148501004 chr7:100864516-100869523 Sample_02_1485 Bone SK-ES-1 1004 1 169 14 2 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_127801049 chr7:100864578-100871419 Sample_02_1278 Chordoma UCH1_DMSO_48h 1049 2 230 21 2 0 1134 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_085200158 chr7:100864618-100869765 Sample_02_0852 Mammary gland MCF7L-P 158 1 167 12 2 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_115900156 chr7:100864618-100869765 Sample_02_1159 Mammary gland MCF7 156 1 167 12 2 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_031000596 chr7:100864729-100880175 Sample_02_0310 Neuroblastoma SJNB8 596 3 525 39 1 0 1620 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_030500469 chr7:100864732-100877543 Sample_02_0305 Neuroblastoma SH-EP 469 2 435 33 1 0 1620 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_008600987 chr7:100864750-100869671 Sample_02_0086 Pancreas CAPAN1 987 1 159 10 1 0 984 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_049100774 chr7:100864894-100869256 Sample_02_0491 Pharyng Detroit 562-Control 774 1 141 10 1 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_01_006100172 chr7:100864895-100869727 Sample_01_0061 Prostate RWPE1 172 1 156 10 1 0 984 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_049200832 chr7:100864938-100869267 Sample_02_0492 Pharyng Detroit 562_LPS 832 1 141 10 1 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_039600392 chr7:100864944-100869633 Sample_02_0396 Skin NHEK-D 392 1 152 8 1 0 984 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_01_011400450 chr7:100864978-100869460 Sample_01_0114 Colon HCT116_encode 450 1 147 8 1 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_029300326 chr7:100865028-100869479 Sample_02_0293 Pancreatic L3-6_4SC-202 326 1 147 8 1 0 984 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_141900488 chr7:100865070-100869712 Sample_02_1419 Brain hNSC 488 1 154 8 1 0 984 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_147000548 chr7:100865091-100868833 Sample_02_1470 Umbilical Vein H441 548 1 130 8 1 0 932 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_125800577 chr7:100865098-100873205 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 577 2 274 18 1 0 1347 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_023700932 chr7:100865121-100869446 Sample_02_0237 Colon V389 932 1 146 8 1 0 978 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_02_050500489 chr7:100865133-100869815 Sample_02_0505 Esophagus KYSE70_1 489 1 152 8 1 0 978 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_051600489 chr7:100865140-100869815 Sample_02_0516 Esophagus KYSE70 489 1 152 8 1 0 978 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_039500762 chr7:100865167-100871892 Sample_02_0395 Mammary gland BT-549 762 2 221 17 1 0 1212 TRIP6,SLC12A9,EPHB4,UFSP1,SRRT,ACHE
SE_01_010701398 chr7:100865199-100869342 Sample_01_0107 Esophagus esophagus squamous epithelium 1398 1 137 8 1 0 971 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_117301032 chr7:100865215-100869283 Sample_02_1173 Brain GBM01 1032 1 136 8 1 0 968 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_085400326 chr7:100865266-100869562 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 326 1 145 8 1 0 960 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_059600410 chr7:100865280-100869321 Sample_02_0596 Mammary gland MCF10A_ DMSO 410 1 134 8 1 0 956 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_126900699 chr7:100865434-100869459 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 699 1 133 8 1 0 931 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_034700172 chr7:100865452-100888535 Sample_02_0347 Blood AML11 172 4 795 58 3 0 2807 TRIP6,SLC12A9,SRRT,EPHB4,UFSP1,ACHE
SE_02_061001301 chr7:100865489-100869408 Sample_02_0610 Liposarcoma MLS 1765-92 1301 1 129 8 1 0 925 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_102900627 chr7:100865513-100869628 Sample_02_1029 Colon HCT116 627 1 136 8 1 0 925 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_051700888 chr7:100865557-100869469 Sample_02_0517 Esophagus TE5 888 1 130 8 1 0 924 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_119900549 chr7:100865564-100869352 Sample_02_1199 Brain GBM35 549 1 123 8 1 0 924 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_064300350 chr7:100865602-100869404 Sample_02_0643 Mammary gland MDA-MB-436 350 1 126 8 1 0 918 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_147400495 chr7:100865640-100869410 Sample_02_1474 Bone CHLA-10 495 1 125 8 1 0 913 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_143301466 chr7:100865645-100869498 Sample_02_1433 Bone A673 STAG2 null 1466 1 126 8 1 0 913 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_107700266 chr7:100865664-100869550 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 266 1 126 8 1 0 913 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_103500810 chr7:100865694-100869608 Sample_02_1035 Mammary gland HCC70_Vehicle 810 1 129 8 1 0 909 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_102600508 chr7:100865713-100869363 Sample_02_1026 Esophagus KYSE200 508 1 119 8 1 0 901 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_138100678 chr7:100865742-100869744 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 678 1 129 8 1 0 895 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_103600822 chr7:100865757-100869673 Sample_02_1036 Mammary gland HCC70_XY018 822 1 128 8 1 0 893 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_066100937 chr7:100865778-100869637 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 937 1 127 8 1 0 888 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
SE_02_107600284 chr7:100865880-100869573 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 284 1 121 7 1 0 861 SLC12A9,TRIP6,MIR6875,ACHE,EPHB4,SRRT,UFSP1
Genomic distribution of SEs associated with SLC12A9
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC12A9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)