SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000225855
Gene: RUSC1-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr1:155316863-155324176 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900903 chr1:155311030-155340480 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 903 15 697 34 1 220 2910 ASH1L,FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_085400604 chr1:155311188-155325672 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 604 3 339 20 1 148 1924 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_108200926 chr1:155311207-155325042 Sample_02_1082 Retina retina 926 3 332 20 1 138 1762 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_050500822 chr1:155311466-155326945 Sample_02_0505 Esophagus KYSE70_1 822 2 360 21 1 156 2141 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_076500354 chr1:155317672-155327478 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 354 1 233 11 0 153 1992 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_156001050 chr1:155319902-155344655 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1050 5 583 26 0 218 2572 ASH1L,FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_058400777 chr1:155319963-155329067 Sample_02_0584 Lung H1299 WT 777 3 218 9 0 143 1734 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_058600451 chr1:155320336-155332289 Sample_02_0586 Chordal patient-derived chordoma MGH_4 451 2 287 12 0 150 1883 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_133300271 chr1:155320510-155326913 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 271 2 143 5 0 138 1508 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_085200529 chr1:155321409-155327159 Sample_02_0852 Mammary gland MCF7L-P 529 1 125 5 0 124 1360 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
SE_02_115900531 chr1:155321409-155327159 Sample_02_1159 Mammary gland MCF7 531 1 125 5 0 124 1360 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
SE_02_064000612 chr1:155321757-155327039 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 612 3 107 3 0 121 1262 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
SE_02_062300399 chr1:155321780-155330962 Sample_02_0623 Mammary gland TAMR_E2 399 4 211 8 0 131 1521 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
SE_02_127800621 chr1:155321846-155333574 Sample_02_1278 Chordoma UCH1_DMSO_48h 621 2 271 11 0 128 1566 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
SE_02_062400365 chr1:155321851-155330512 Sample_02_0624 Mammary gland TAMR_VEH 365 5 195 8 0 122 1430 RUSC1,RUSC1-AS1,FDPS,HCN3,CLK2,PKLR,MIR555
Genomic distribution of SEs associated with RUSC1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of RUSC1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)