SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000172426
Gene: RSPH9 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:43645036-43672600 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003200366 chr6:43623774-43646052 Sample_02_0032 Pancreas pancreatic-islets-M 366 3 548 58 1 136 1525 MAD2L1BP,GTPBP2,RSPH9,XPO5,POLH,MRPS18A
SE_02_003801769 chr6:43625444-43645974 Sample_02_0038 Embryo DE 1769 5 521 57 1 102 1235 MAD2L1BP,GTPBP2,RSPH9,XPO5,POLH,MRPS18A
SE_00_002600841 chr6:43626521-43645547 Sample_00_0026 Muscle of trunk muscle-of-trunk 841 4 484 55 1 81 1026 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_00_004300535 chr6:43626553-43646008 Sample_00_0043 Stomach stomach_96d 535 3 495 55 1 81 1019 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_00_002500792 chr6:43626573-43645653 Sample_00_0025 Muscle of leg muscle-of-leg 792 5 484 55 1 81 1015 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_02_001900670 chr6:43628157-43646061 Sample_02_0019 Embryo Neural crest cells 670 3 462 48 1 75 894 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_02_001700698 chr6:43628268-43646005 Sample_02_0017 Embryo H9_ESC 698 3 459 48 1 75 894 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_02_004600749 chr6:43628315-43645421 Sample_02_0046 Embryo endodermal CyT49_ES_D10 749 3 445 47 0 75 853 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_02_004500708 chr6:43628340-43645939 Sample_02_0045 Embryo endodermal CyT49_ES_D7 708 4 458 48 1 75 894 MAD2L1BP,GTPBP2,RSPH9,MRPS18A
SE_02_103501973 chr6:43631593-43673276 Sample_02_1035 Mammary gland HCC70_Vehicle 1973 16 1190 119 2 86 1279 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_103601930 chr6:43631880-43670617 Sample_02_1036 Mammary gland HCC70_XY018 1930 13 1092 109 1 70 1001 RSPH9,MAD2L1BP,MRPS18A,GTPBP2
SE_02_104602639 chr6:43655397-43677422 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2639 10 632 50 1 61 738 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_019400358 chr6:43664706-43674299 Sample_02_0194 Kidney Patient_x750T 358 1 291 21 1 36 375 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_129900426 chr6:43665003-43685331 Sample_02_1299 Liver liver 426 7 585 52 1 139 757 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_093500670 chr6:43665699-43680911 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 670 8 444 36 1 84 690 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_081800487 chr6:43666013-43675213 Sample_02_0818 Ovary High-grade serous ovarian cancer 487 1 289 23 1 36 410 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_074300356 chr6:43666032-43718786 Sample_02_0743 Embryo ES derived mesoderm_day2 356 18 1480 127 4 250 854 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_119701017 chr6:43666038-43684617 Sample_02_1197 Brain GBM33 1017 11 538 47 1 138 757 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_121200329 chr6:43666110-43695707 Sample_02_1212 Brain GBM30 329 10 830 81 2 172 854 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_097100379 chr6:43666257-43725437 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 379 13 1684 140 4 284 846 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_093700541 chr6:43666366-43685068 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 541 6 542 49 1 139 719 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_129700134 chr6:43666369-43745118 Sample_02_1297 Lung lung 134 24 2230 178 7 372 816 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_036700209 chr6:43666615-43703557 Sample_02_0367 Skeletal muscle NS129 209 5 1026 102 2 195 779 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_095800209 chr6:43666756-43725335 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 209 13 1665 138 4 272 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_01_007600616 chr6:43666761-43719731 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 616 6 1486 126 4 251 758 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_01_009700223 chr6:43666880-43718485 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 223 8 1450 125 4 243 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_036800288 chr6:43666884-43703605 Sample_02_0368 Skeletal muscle NS134 288 5 1018 102 2 195 758 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_124800373 chr6:43666930-43672502 Sample_02_1248 Bladder RT4 373 1 181 16 1 28 279 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_117900577 chr6:43667055-43688469 Sample_02_1179 Brain GBM08 577 8 613 56 1 156 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_021100196 chr6:43667180-43719082 Sample_02_0211 Lung MRC-5_NFD_1DPT 196 9 1453 126 4 250 758 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_081700189 chr6:43667288-43726166 Sample_02_0817 Ovary Epithelial ovarian cancer 189 14 1679 142 4 293 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_110700134 chr6:43667313-43726242 Sample_02_1107 Brain SK-N-AS 134 23 1682 142 4 293 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_01_009400534 chr6:43667399-43718654 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 534 9 1442 125 4 245 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_089200658 chr6:43667421-43720056 Sample_02_0892 Heart left ventricle_LV1215 658 16 1482 126 4 251 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_088900770 chr6:43667429-43720438 Sample_02_0889 Heart left ventricle_LV1183 770 18 1495 126 4 251 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_075300037 chr6:43667433-43720869 Sample_02_0753 Embryo ES-derived progenitors_FG type 37 13 1514 128 4 251 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_122400202 chr6:43667451-43725838 Sample_02_1224 Bone marrow normal plasma cell 202 24 1668 140 4 290 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_091000799 chr6:43667453-43720143 Sample_02_0910 Heart left ventricle_DCM_LV1275 799 19 1485 126 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_110600454 chr6:43667472-43741421 Sample_02_1106 Brain NGP 454 36 2081 160 7 350 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_090400797 chr6:43667474-43720226 Sample_02_0904 Heart left ventricle_DCM_LV1028 797 20 1487 126 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_033000598 chr6:43667503-43714731 Sample_02_0330 Endoderm MHG 598 10 1304 117 3 207 758 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_089600709 chr6:43667504-43720414 Sample_02_0896 Heart left ventricle_LV1294 709 20 1491 125 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_088700486 chr6:43667517-43720297 Sample_02_0887 Heart left ventricle_LV1121 486 14 1486 125 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_090600556 chr6:43667520-43719700 Sample_02_0906 Heart left ventricle_DCM_LV1072 556 17 1463 125 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_090700873 chr6:43667522-43719878 Sample_02_0907 Heart left ventricle_DCM_LV1223 873 14 1473 125 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_090301133 chr6:43667563-43719456 Sample_02_0903 Heart left ventricle_DCM_LV1009 1133 16 1455 125 4 249 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_004000605 chr6:43667586-43714654 Sample_02_0040 Embryo PFG 605 7 1300 116 3 207 758 RSPH9,MRPS18A,MAD2L1BP,GTPBP2
SE_02_075600261 chr6:43667601-43720584 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 261 12 1495 125 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_090200869 chr6:43667606-43720072 Sample_02_0902 Heart left ventricle_LV1558 869 15 1476 125 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_090000393 chr6:43667606-43720274 Sample_02_0900 Heart left ventricle_LV1452 393 20 1484 125 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_089000338 chr6:43667639-43720044 Sample_02_0890 Heart left ventricle_LV1200 338 13 1476 125 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_092000491 chr6:43667669-43719709 Sample_02_0920 Heart left ventricle_DCM_LV1535 491 18 1458 125 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_097300383 chr6:43667814-43688565 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 383 4 600 55 1 155 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_091500783 chr6:43667907-43719552 Sample_02_0915 Heart left ventricle_DCM_LV1371 783 15 1446 125 4 249 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_091201093 chr6:43667918-43719652 Sample_02_0912 Heart left ventricle_DCM_LV1300 1093 15 1449 125 4 249 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_00_005600671 chr6:43668267-43733584 Sample_00_0056 Sigmoid colon sigmoid colon 3y 671 28 1862 152 6 309 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
SE_02_090801083 chr6:43668320-43719693 Sample_02_0908 Heart left ventricle_DCM_LV1262 1083 18 1442 125 4 249 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_089900338 chr6:43668435-43720067 Sample_02_0899 Heart left ventricle_LV1400 338 20 1449 124 4 250 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_091800711 chr6:43668465-43719651 Sample_02_0918 Heart left ventricle_DCM_LV1437 711 12 1427 124 4 249 758 RSPH9,MRPS18A,GTPBP2,MAD2L1BP
SE_02_091400396 chr6:43668713-43720288 Sample_02_0914 Heart left ventricle_DCM_LV1342 396 19 1448 124 4 250 758 RSPH9,MRPS18A,VEGFA,MAD2L1BP,GTPBP2
Genomic distribution of SEs associated with RSPH9
Genome Browser

The strength of the tissue affected by the gene

Expression of RSPH9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)