SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000108375
Gene: RNF43 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:58353676-58417595 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_024200239 chr17:58335530-58419770 Sample_02_0242 Colon V481 239 5 1927 177 22 450 2419 RNF43,SUPT4H1,BZRAP1,MIR142
SE_02_033000032 chr17:58335814-58417723 Sample_02_0330 Endoderm MHG 32 13 1877 174 22 447 2400 RNF43,SUPT4H1,BZRAP1,MIR142
SE_02_129600012 chr17:58339100-58417584 Sample_02_1296 Perigastric lymph node Perigastric lymph node 12 17 1794 167 22 424 2154 RNF43,BZRAP1-AS1,SUPT4H1,MIR4736,MIR142,BZRAP1
SE_02_047700017 chr17:58339115-58417867 Sample_02_0477 Colon intestinal epithelial organoids_139a 17 17 1796 167 22 425 2192 RNF43,BZRAP1-AS1,SUPT4H1,MIR4736,MIR142,BZRAP1,HSF5
SE_02_125300274 chr17:58344106-58417565 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 274 14 1672 156 20 415 2153 RNF43,BZRAP1-AS1,SUPT4H1,MIR4736,MIR142,BZRAP1
SE_02_042700038 chr17:58350501-58429440 Sample_02_0427 Colon HCT116_shPAF1 38 4 1738 148 19 422 2059 RNF43,SUPT4H1,HSF5,BZRAP1,MIR142
SE_02_076500206 chr17:58351198-58400052 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 206 18 1137 104 13 258 1614 RNF43,BZRAP1-AS1,SUPT4H1,MIR4736,MIR142,BZRAP1
SE_02_032400025 chr17:58351198-58422832 Sample_02_0324 Colon SW48 25 7 1582 140 18 417 2059 RNF43,SUPT4H1,HSF5,BZRAP1,MIR142
SE_02_032200063 chr17:58351268-58418176 Sample_02_0322 Colon Caco-2 63 6 1495 135 18 386 1881 RNF43,SUPT4H1,BZRAP1,MIR142
SE_02_035500078 chr17:58352353-58419920 Sample_02_0355 Colon HCT15 78 11 1491 130 18 372 1690 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_035700018 chr17:58352405-58418476 Sample_02_0357 Colon Colo320 18 18 1456 127 18 371 1672 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_047800021 chr17:58353438-58417875 Sample_02_0478 Colon normal colon mucosa 21 23 1416 125 18 360 1521 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_01_003800025 chr17:58353615-58417688 Sample_01_0038 Liver HepG2 25 11 1414 125 18 360 1487 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_152500010 chr17:58353677-58417570 Sample_02_1525 Stomach N87 DMSO 10 9 1412 125 18 354 1459 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_105100025 chr17:58353680-58415495 Sample_02_1051 Esophagus Eso26 25 32 1369 123 18 315 1250 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_052200120 chr17:58353796-58416348 Sample_02_0522 Colon SW620 120 28 1384 124 18 334 1323 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_001500146 chr17:58354188-58395499 Sample_02_0015 Liver HepG2_shNS 146 10 960 81 8 208 1136 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_088400509 chr17:58354326-58419811 Sample_02_0884 Colon LoVo 509 15 1440 125 15 354 1381 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_143400134 chr17:58354551-58428995 Sample_02_1434 Trophoblast trophoblast stem cells 134 10 1615 133 16 387 1509 RNF43,HSF5,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_152700478 chr17:58354566-58378458 Sample_02_1527 Embryo naive embryonic stem cell 478 10 576 48 7 125 1060 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_024000292 chr17:58355916-58417600 Sample_02_0240 Colon V429_2 292 27 1347 117 14 339 1197 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_136300567 chr17:58357334-58391667 Sample_02_1363 Blood Hudep2 567 9 781 60 5 181 866 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_024100204 chr17:58357394-58417704 Sample_02_0241 Colon V456 204 19 1310 115 13 339 1122 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_035800340 chr17:58359934-58373761 Sample_02_0358 Colon LS180 340 1 342 27 5 55 499 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_132300006 chr17:58360094-58419910 Sample_02_1323 Colon DLD1_WT 6 1 1287 114 13 303 752 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_143500083 chr17:58361564-58417538 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 83 11 1199 107 11 284 536 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_004800284 chr17:58362911-58392084 Sample_02_0048 Embryo endodermal CyT49_HE 284 6 649 53 3 139 212 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_028500232 chr17:58363022-58393240 Sample_02_0285 Liver HuH7_untreat 232 5 673 57 3 140 212 RNF43,BZRAP1,MIR142,SUPT4H1
SE_00_002000419 chr17:58363089-58399504 Sample_00_0020 Large intestine large-intestine_108d 419 9 812 76 6 161 209 RNF43,BZRAP1,MIR142,SUPT4H1
SE_01_007900441 chr17:58363198-58418858 Sample_01_0079 Peyers patch Peyers-patch 441 12 1189 104 10 292 460 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_002900008 chr17:58363200-58389272 Sample_02_0029 Colorectal LS174T 8 5 577 43 2 117 187 RNF43,BZRAP1,MIR142,SUPT4H1
SE_00_003600452 chr17:58363310-58399464 Sample_00_0036 Small intestine small-intestine_108days 452 9 801 72 5 157 165 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_075700722 chr17:58363424-58392236 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 722 11 639 50 2 133 144 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_00_005600747 chr17:58363424-58395017 Sample_00_0056 Sigmoid colon sigmoid colon 3y 747 26 709 62 3 135 144 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_022800383 chr17:58363426-58418724 Sample_02_0228 Oesophagus KYSE510 383 7 1178 104 10 286 417 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_025700305 chr17:58363648-58418562 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 305 8 1169 104 10 283 377 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_139500034 chr17:58363665-58417612 Sample_02_1395 Colon COLO320-DM_DMSO 34 14 1153 103 10 279 342 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1,HSF5
SE_02_047600838 chr17:58363674-58391205 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 838 10 608 46 2 113 96 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_074400800 chr17:58363781-58376099 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 800 3 297 23 2 40 80 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_067000083 chr17:58363786-58392655 Sample_02_0670 Mammary gland breast cancer FA 83 12 642 51 2 131 80 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_098800955 chr17:58363805-58392203 Sample_02_0988 Blood K562_EPZ 955 7 632 50 2 130 80 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_01_010900794 chr17:58363894-58415511 Sample_01_0109 Colon transverse colon_54y 794 31 1106 101 10 238 108 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_00_004900457 chr17:58363932-58399834 Sample_00_0049 Small intestine small intestine 30y 457 16 796 72 5 151 80 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_020700582 chr17:58363981-58392213 Sample_02_0207 Stomach FU97 582 7 627 50 2 128 80 RNF43,BZRAP1,MIR142,SUPT4H1
SE_01_009900375 chr17:58363999-58415565 Sample_01_0099 Colon transverse colon 375 22 1103 101 10 243 122 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_101600393 chr17:58364190-58415807 Sample_02_1016 Embryo H9_Mesendoderm_24h 393 12 1102 100 10 253 148 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_001400163 chr17:58364505-58396491 Sample_02_0014 Liver HepG2_shBRG1 163 10 724 66 5 135 80 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_067200349 chr17:58364527-58417610 Sample_02_0672 Endometrium endometrium cancer_DSG 349 27 1136 102 10 275 322 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_067400945 chr17:58364720-58397759 Sample_02_0674 Endometrium E1_FA 945 19 731 68 5 138 80 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_071100092 chr17:58365205-58417604 Sample_02_0711 Pancreas hN35_organoid 92 22 1120 102 10 271 319 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_023600087 chr17:58365628-58415614 Sample_02_0236 Colon V206 87 29 1073 100 10 232 127 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_044501030 chr17:58365682-58418463 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 1030 20 1130 103 10 264 353 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_105500287 chr17:58366008-58417518 Sample_02_1055 Esophagus KYAE1 287 21 1113 102 10 255 307 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_142900253 chr17:58367183-58428985 Sample_02_1429 Blood GM12878_WT 253 13 1309 112 11 299 525 RNF43,HSF5,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1,MKS1,MTMR4
SE_02_036100027 chr17:58368860-58418546 Sample_02_0361 Colon HT29_DMSO 27 9 1052 95 10 261 353 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_035300255 chr17:58368999-58417716 Sample_02_0353 Colon HT29 255 17 1032 94 10 259 341 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_070900063 chr17:58369281-58428505 Sample_02_0709 Pancreas hT85_organoid 63 20 1240 102 11 296 525 RNF43,HSF5,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_035800034 chr17:58374265-58404880 Sample_02_0358 Colon LS180 34 1 648 58 4 159 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_035400285 chr17:58374530-58404970 Sample_02_0354 Colon Colo205 285 1 650 57 4 159 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_052100269 chr17:58375222-58386581 Sample_02_0521 Colon SW480 269 1 246 19 0 54 0 RNF43,BZRAP1-AS1,MIR4736,MIR142,BZRAP1,SUPT4H1
SE_02_152400043 chr17:58376005-58417550 Sample_02_1524 Lung H3122 DMSO 43 12 856 80 8 234 230 RNF43,BZRAP1-AS1,MIR142,MIR4736,BZRAP1,SUPT4H1
SE_02_035600260 chr17:58376425-58404838 Sample_02_0356 Colon Sw480 260 1 601 57 4 154 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_019900164 chr17:58377072-58413256 Sample_02_0199 Stomach KATO3 164 19 752 71 7 175 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_077200172 chr17:58377151-58392665 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 172 4 321 24 0 90 0 RNF43,BZRAP1-AS1,MIR142,MIR4736,BZRAP1,SUPT4H1
SE_01_004400741 chr17:58377660-58393186 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 741 3 328 26 0 78 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_020200259 chr17:58377729-58402692 Sample_02_0202 Stomach YCC7 259 13 533 50 3 128 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_042400537 chr17:58378442-58396820 Sample_02_0424 Colon SW620 537 1 400 38 3 85 0 RNF43,BZRAP1,MIR142,SUPT4H1
SE_02_152300451 chr17:58379500-58395308 Sample_02_1523 Lung A549 DMSO 451 9 353 32 1 78 0 RNF43,BZRAP1-AS1,MIR142,MIR4736,SUPT4H1
SE_02_042600134 chr17:58382773-58429571 Sample_02_0426 Colon HCT116_NONT 134 3 964 77 9 240 445 RNF43,HSF5,SUPT4H1
SE_02_019700155 chr17:58383187-58413364 Sample_02_0197 Stomach SNU1750 155 6 638 59 7 135 0 RNF43,SUPT4H1
SE_02_035200334 chr17:58383251-58429126 Sample_02_0352 Colon HCT116 334 11 944 76 9 236 445 RNF43,HSF5,SUPT4H1
SE_02_071000145 chr17:58383424-58416086 Sample_02_0710 Pancreas hN34_organoid 145 17 681 64 8 181 91 RNF43,SUPT4H1,BZRAP1-AS1,MIR4736
SE_02_014300024 chr17:58383783-58419075 Sample_02_0143 Colon HCT116_Parental 24 5 733 65 8 202 273 RNF43,SUPT4H1
SE_02_045800035 chr17:58384596-58428476 Sample_02_0458 Colon HCT116 DMSO 35 13 901 73 9 230 445 RNF43,HSF5,SUPT4H1,BZRAP1-AS1,MIR4736
SE_01_000200190 chr17:58386727-58399387 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 190 2 268 29 3 60 0 RNF43,SUPT4H1
SE_02_052100294 chr17:58386736-58396773 Sample_02_0521 Colon SW480 294 1 217 25 3 48 0 RNF43,SUPT4H1,BZRAP1-AS1
SE_01_000100178 chr17:58386940-58392591 Sample_01_0001 Prostate 22Rv1 178 2 112 9 0 38 0 RNF43,SUPT4H1
SE_02_014100035 chr17:58387976-58419048 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 35 8 634 63 8 181 273 RNF43,SUPT4H1
SE_02_124700053 chr17:58388603-58428925 Sample_02_1247 Colon HCT116_IFN-beta_1h 53 14 821 72 9 211 445 RNF43,HSF5,SUPT4H1
SE_02_129700499 chr17:58389908-58404984 Sample_02_1297 Lung lung 499 1 331 36 4 82 0 RNF43,SUPT4H1
SE_02_135700598 chr17:58391780-58415947 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 598 4 489 52 8 130 76 RNF43,SUPT4H1
SE_02_066100181 chr17:58391907-58417507 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 181 11 522 54 8 143 226 RNF43,SUPT4H1
SE_02_072100523 chr17:58392443-58414847 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 523 12 462 50 7 93 0 RNF43,SUPT4H1
SE_02_066000437 chr17:58393991-58417573 Sample_02_0660 Mammary gland MCF10DCIS 437 8 473 46 8 147 235 RNF43,SUPT4H1
SE_02_112100387 chr17:58398051-58415973 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 387 4 351 31 5 119 78 RNF43,SUPT4H1
SE_02_000500323 chr17:58399756-58418529 Sample_02_0005 Cervical cervical-cancer_KDM5C 323 2 369 32 5 129 273 RNF43,SUPT4H1
SE_01_004100223 chr17:58399779-58417860 Sample_01_0041 Skin keratinocyte 223 3 355 31 5 127 273 RNF43,SUPT4H1
SE_02_135900421 chr17:58399844-58417542 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 421 5 350 31 5 120 229 RNF43,SUPT4H1
SE_02_135800503 chr17:58399845-58417561 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 503 4 351 31 5 122 233 RNF43,SUPT4H1
SE_02_006300631 chr17:58400073-58418523 Sample_02_0063 Skin Keratinocytes 631 2 364 32 5 129 273 RNF43,SUPT4H1
SE_02_009700559 chr17:58401197-58415014 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 559 3 272 24 4 70 0 RNF43,SUPT4H1
SE_01_002700841 chr17:58401517-58415099 Sample_01_0027 Prostate epithelial-cell-of-prostate 841 2 266 23 4 57 0 RNF43,SUPT4H1
SE_02_107300295 chr17:58401597-58417534 Sample_02_1073 Keratinocyte keratinocytes stem cell 295 3 313 26 5 97 229 RNF43,SUPT4H1
SE_01_004501147 chr17:58401673-58417673 Sample_01_0045 Mammary gland mammary-epithelial-cell 1147 2 315 26 5 104 248 RNF43,SUPT4H1
SE_02_005700580 chr17:58402048-58417605 Sample_02_0057 Mammary gland vHMEC 580 4 311 26 5 103 239 RNF43,SUPT4H1
SE_02_048000515 chr17:58402894-58417550 Sample_02_0480 Gingival epithelial HGEP 515 4 286 25 5 87 230 RNF43
SE_02_129900545 chr17:58405192-58418341 Sample_02_1299 Liver liver 545 1 250 22 4 88 273 RNF43
SE_02_135101041 chr17:58407816-58428912 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1041 3 417 27 5 111 445 RNF43,HSF5
SE_02_152300606 chr17:58410590-58417531 Sample_02_1523 Lung A549 DMSO 606 2 132 11 3 63 229 RNF43
SE_02_068800254 chr17:58412215-58417605 Sample_02_0688 Lung NCI-H211_no infection 254 2 98 6 1 64 239 RNF43
Genomic distribution of SEs associated with RNF43
Genome Browser

The strength of the tissue affected by the gene

Expression of RNF43

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)