SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000147509
Gene: RGS20 Gene type: protein_coding
Strand: + External links:
Genomic region: chr8:53851795-53959303 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_149300069 chr8:53839687-53886744 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 69 14 1220 10 3 101 693 ATP6V1H,RGS20
SE_02_155100233 chr8:53840809-53886332 Sample_02_1551 Gastrointestinal Stromal MaMel 233 8 1184 10 3 100 633 ATP6V1H,RGS20
SE_02_021300552 chr8:53841012-53907656 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 552 7 1694 36 3 126 633 RGS20,ATP6V1H
SE_02_078300097 chr8:53842446-53913196 Sample_02_0783 Blood MEC2 97 20 1779 39 3 118 593 ATP6V1H,RGS20
SE_02_130300111 chr8:53853664-53959299 Sample_02_1303 Lymphoma RL_tazemetostat 111 36 2676 73 6 127 716 RGS20,ATP6V1H
SE_02_018300226 chr8:53854888-53886740 Sample_02_0183 Skin SKMEL2 226 9 845 5 3 71 338 RGS20,ATP6V1H
SE_02_035900178 chr8:53855126-53883236 Sample_02_0359 Colon Colo741 178 4 756 4 3 55 338 RGS20,ATP6V1H
SE_02_018500101 chr8:53855166-53885445 Sample_02_0185 Skin UACC257 101 6 807 4 3 59 338 RGS20,ATP6V1H
SE_02_018400122 chr8:53855220-53885025 Sample_02_0184 Skin SKMEL30 122 6 794 4 3 59 338 RGS20,ATP6V1H
SE_02_010500907 chr8:53855267-53888577 Sample_02_0105 Skin neonatal_keratinocytes 907 4 875 5 3 74 338 RGS20,ATP6V1H
SE_02_018100477 chr8:53856894-53887068 Sample_02_0181 melanoma COLO679 477 7 801 4 3 73 338 RGS20,ATP6V1H
SE_02_130400706 chr8:53859052-53914650 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 706 17 1403 33 2 96 436 RGS20,ATP6V1H
SE_02_068300063 chr8:53863286-53977144 Sample_02_0683 Lung DMS114 63 50 2902 98 5 139 869 RGS20,TCEA1,ATP6V1H
SE_02_102500273 chr8:53865043-53886929 Sample_02_1025 Esophagus KYSE150 273 9 581 4 2 65 338 RGS20,ATP6V1H
SE_02_103700057 chr8:53866759-53890912 Sample_02_1037 Pharynx FaDu Control 57 6 625 5 2 61 338 RGS20,ATP6V1H
SE_02_076200909 chr8:53866787-53887842 Sample_02_0762 Podocyte podocyte_CTL 909 8 559 4 2 61 338 RGS20,ATP6V1H
SE_02_094600205 chr8:53867284-53887388 Sample_02_0946 Tongue HN12 205 4 535 4 2 61 338 RGS20,ATP6V1H
SE_02_108500846 chr8:53867412-53886846 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 846 6 516 4 2 58 338 RGS20,ATP6V1H
SE_02_103800077 chr8:53867461-53888532 Sample_02_1038 Pharynx FaDu LPS 77 3 555 4 2 61 338 RGS20,ATP6V1H
SE_02_065900339 chr8:53867477-53925582 Sample_02_0659 Lung H23 339 20 1474 42 3 85 436 RGS20,ATP6V1H
SE_02_039600471 chr8:53867552-53886971 Sample_02_0396 Skin NHEK-D 471 5 515 4 2 61 338 RGS20,ATP6V1H
SE_02_076300374 chr8:53867575-53919156 Sample_02_0763 Podocyte podocyte_DEX 374 11 1301 37 2 84 436 RGS20,ATP6V1H
SE_02_077000815 chr8:53867618-53917883 Sample_02_0770 Ovary OVCA429_shLuc 815 18 1259 37 1 84 436 RGS20,ATP6V1H
SE_02_076900264 chr8:53868722-53918590 Sample_02_0769 Ovary HEYA8 264 17 1260 37 0 84 436 RGS20,ATP6V1H
SE_02_076000589 chr8:53872678-53887956 Sample_02_0760 Ovary BIN-67_SMARCA4 589 4 402 2 0 59 338 RGS20,ATP6V1H
SE_02_093100226 chr8:53876120-53883208 Sample_02_0931 Embryo H9 UTXKO 226 2 190 1 0 38 338 RGS20,ATP6V1H
SE_02_093200326 chr8:53876129-53883144 Sample_02_0932 Embryo H9 WT_1 326 2 183 1 0 38 338 RGS20,ATP6V1H
SE_02_059400266 chr8:53876210-53919129 Sample_02_0594 iPSC-derived neural progenitors 266 13 1062 35 0 80 436 RGS20,ATP6V1H
SE_02_097200795 chr8:53876244-53887864 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 795 4 300 2 0 57 338 RGS20,ATP6V1H
SE_02_093400300 chr8:53876370-53883028 Sample_02_0934 Embryo H7-WT 300 2 176 1 0 36 338 RGS20,ATP6V1H
SE_02_080800724 chr8:53876717-53915884 Sample_02_0808 Ovary RMG1_ARID1A KO 724 11 961 31 0 78 436 RGS20,ATP6V1H
SE_02_064500447 chr8:53877428-53886463 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 447 4 219 2 0 51 338 RGS20,ATP6V1H
SE_02_042200097 chr8:53878228-53907249 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 97 3 707 28 0 68 338 RGS20,ATP6V1H
SE_02_017900217 chr8:53878269-53917299 Sample_02_0179 Urinary bladder T24 217 7 938 32 0 69 436 RGS20,ATP6V1H
SE_02_043300125 chr8:53878300-53908523 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 125 4 731 28 0 68 338 RGS20,ATP6V1H
SE_02_025800171 chr8:53878474-53891378 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 171 2 300 3 0 45 338 RGS20,ATP6V1H
SE_02_045300561 chr8:53878697-53916974 Sample_02_0453 Neuroblastoma SJNB3 561 12 923 31 0 68 436 RGS20,ATP6V1H
SE_02_010600183 chr8:53878939-53885985 Sample_02_0106 Skin NHEK_M 183 2 174 2 0 32 338 RGS20,ATP6V1H
SE_02_026000186 chr8:53878997-53897437 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 186 4 414 13 0 54 338 RGS20,ATP6V1H
SE_02_025900185 chr8:53879134-53888977 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 185 1 236 3 0 44 328 RGS20,ATP6V1H
SE_02_029500457 chr8:53879166-53887364 Sample_02_0295 Lung A549_TGFBeta_72h 457 3 199 2 0 44 322 RGS20,ATP6V1H
SE_02_064600351 chr8:53879173-53886701 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 351 3 182 2 0 40 322 RGS20,ATP6V1H
SE_02_064900435 chr8:53879178-53885965 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 435 4 168 2 0 31 322 RGS20,ATP6V1H
SE_02_065000423 chr8:53879205-53885989 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 423 2 168 2 0 31 317 RGS20,ATP6V1H
SE_02_058400153 chr8:53879264-53886840 Sample_02_0584 Lung H1299 WT 153 2 181 2 0 39 304 RGS20,ATP6V1H
SE_02_133300066 chr8:53879292-53883900 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 66 2 114 1 0 23 297 RGS20,ATP6V1H
SE_02_064400267 chr8:53879330-53885465 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 267 3 153 1 0 27 289 RGS20,ATP6V1H
SE_02_133400079 chr8:53879356-53883878 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 79 2 113 1 0 23 285 RGS20,ATP6V1H
SE_02_133700073 chr8:53879395-53883825 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 73 2 109 1 0 20 270 RGS20,ATP6V1H
SE_02_044800886 chr8:53879407-53887143 Sample_02_0448 Bone MNNG 886 4 186 2 0 39 267 RGS20,ATP6V1H
SE_02_157900532 chr8:53879436-53887526 Sample_02_1579 Renal 786-M1A 532 3 198 2 0 39 250 RGS20,ATP6V1H
SE_02_133500118 chr8:53879641-53882980 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 118 1 80 1 0 18 196 RGS20,ATP6V1H
SE_02_078200543 chr8:53879734-53910450 Sample_02_0782 Blood MEC1 543 5 729 29 0 59 164 RGS20,ATP6V1H
SE_01_009600221 chr8:53882656-53914656 Sample_01_0096 B-cell lymphoma DOHH2 221 9 760 30 0 42 98 RGS20,ATP6V1H
SE_02_130200577 chr8:53883516-53916594 Sample_02_1302 Lymphoma RL DMSO 577 9 792 30 0 42 98 RGS20,ATP6V1H
SE_02_099900293 chr8:53883794-53914452 Sample_02_0999 Lymphoma OCI-LY1_966 293 20 725 30 0 42 98 RGS20,ATP6V1H
SE_02_099800403 chr8:53884229-53913754 Sample_02_0998 Lymphoma OCI-LY1_DMSO 403 23 698 30 0 42 62 RGS20,ATP6V1H
SE_02_122300801 chr8:53884259-53907356 Sample_02_1223 Bone marrow KMS28BM 801 5 564 27 0 41 0 RGS20,ATP6V1H
SE_02_093100650 chr8:53899064-53908455 Sample_02_0931 Embryo H9 UTXKO 650 3 253 9 0 6 0 RGS20
SE_02_097200707 chr8:53902721-53908677 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 707 1 142 7 0 4 0 RGS20
SE_02_093300229 chr8:53903310-53907650 Sample_02_0933 Embryo H7 UTXKO 229 2 97 2 0 4 0 RGS20
SE_02_103800224 chr8:53906351-53958390 Sample_02_1038 Pharynx FaDu LPS 224 9 1301 41 3 27 319 RGS20
SE_02_060300255 chr8:53937776-53958122 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 255 6 480 17 2 19 199 RGS20
SE_02_060200594 chr8:53937779-53957897 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 594 5 474 17 2 19 196 RGS20
SE_02_103700149 chr8:53937810-53961247 Sample_02_1037 Pharynx FaDu Control 149 6 579 21 2 30 298 RGS20
SE_02_094600288 chr8:53937939-53958437 Sample_02_0946 Tongue HN12 288 3 488 17 2 23 223 RGS20
SE_02_113200376 chr8:53938217-53959030 Sample_02_1132 Pancreas KLM1 wt 376 10 498 17 2 27 269 RGS20
SE_01_002700873 chr8:53938256-53958532 Sample_01_0027 Prostate epithelial-cell-of-prostate 873 3 487 16 2 26 230 RGS20
SE_02_064502008 chr8:53938509-53957960 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2008 5 463 16 2 19 196 RGS20
SE_02_064601369 chr8:53938562-53957783 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1369 4 453 16 2 19 196 RGS20
SE_02_043300393 chr8:53938563-53964200 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 393 5 656 28 2 30 298 RGS20
SE_02_048001245 chr8:53938578-53958321 Sample_02_0480 Gingival epithelial HGEP 1245 8 476 16 2 21 216 RGS20
SE_02_150900245 chr8:53938602-53949080 Sample_02_1509 Lung H3122_LR 245 4 243 7 2 8 118 RGS20
SE_02_001100813 chr8:53939692-53957764 Sample_02_0011 Kidney A-498_wtVHL 813 3 422 16 2 15 145 RGS20
SE_02_009700890 chr8:53941436-53957923 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 890 3 392 14 1 15 118 RGS20
SE_02_103200709 chr8:53941963-53962427 Sample_02_1032 Head and neck SCC1 JQ1 709 11 524 23 1 26 220 RGS20,TCEA1
SE_02_076900831 chr8:53942062-53964224 Sample_02_0769 Ovary HEYA8 831 9 579 26 1 26 220 RGS20,TCEA1
SE_02_001300219 chr8:53942377-53947052 Sample_02_0013 Kidney 786-O_HIF2A 219 2 104 5 1 4 40 RGS20
SE_02_003000478 chr8:53942785-53947041 Sample_02_0030 Kidney human kidney proximal tubule cells 478 3 94 5 1 4 40 RGS20
SE_02_058400771 chr8:53942828-53964915 Sample_02_0584 Lung H1299 WT 771 5 577 26 1 26 220 RGS20,TCEA1
SE_02_084001390 chr8:53943066-53964096 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1390 9 557 26 1 26 220 RGS20,TCEA1
SE_02_083901259 chr8:53943146-53954719 Sample_02_0839 Embryo hNPCs_K755R/+ 1259 2 276 6 1 14 118 RGS20
SE_02_046900446 chr8:53943770-53946977 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 446 3 75 3 1 4 40 RGS20
SE_02_046800167 chr8:53944702-53946815 Sample_02_0468 Kidney 786-O PBRM1 shRNA#1 167 4 45 3 1 2 28 RGS20
Genomic distribution of SEs associated with RGS20
Genome Browser

The strength of the tissue affected by the gene

Expression of RGS20

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)