Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000080298
Gene: RFX3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:3218297-3526004 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_094900958 chr9:3320289-3338523 Sample_02_0949 Umbilical artery HUAEC_WT 958 13 591 54 0 31 57 RFX3
SE_02_141000041 chr9:3435384-3528186 Sample_02_1410 Brain GSC6 41 22 2855 111 1 321 348 RFX3
SE_02_068700090 chr9:3435872-3530912 Sample_02_0687 Lung NCI-H146_no infection 90 18 2933 116 1 332 348 RFX3
SE_02_150301263 chr9:3444650-3479887 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1263 21 1134 41 1 83 14 RFX3
SE_02_129600030 chr9:3455900-3528789 Sample_02_1296 Perigastric lymph node Perigastric lymph node 30 17 2247 89 1 266 348 RFX3
SE_02_130200092 chr9:3457344-3529602 Sample_02_1302 Lymphoma RL DMSO 92 14 2230 90 1 270 348 RFX3
SE_02_085400695 chr9:3457875-3481533 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 695 7 774 33 1 51 132 RFX3
SE_02_069300029 chr9:3458814-3529917 Sample_02_0693 Lung NCI-H69_no infection 29 36 2193 89 1 270 348 RFX3
SE_02_059400130 chr9:3458822-3528898 Sample_02_0594 iPSC-derived neural progenitors 130 13 2161 87 1 266 348 RFX3
SE_02_115200064 chr9:3467279-3528202 Sample_02_1152 Lymphoma RL_WT_gRNA1 64 9 1840 76 1 249 348 RFX3
SE_02_130400171 chr9:3467356-3533567 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 171 14 2018 88 1 260 348 RFX3
SE_02_032000525 chr9:3467376-3482480 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 525 2 469 21 1 35 132 RFX3
SE_02_115500049 chr9:3467380-3528646 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 49 5 1848 76 1 250 348 RFX3
SE_02_115300096 chr9:3467494-3528734 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 96 7 1848 76 1 250 348 RFX3
SE_02_129700089 chr9:3467871-3528891 Sample_02_1297 Lung lung 89 35 1838 76 1 250 348 RFX3
SE_02_142900143 chr9:3467896-3532060 Sample_02_1429 Blood GM12878_WT 143 15 1941 82 1 259 348 RFX3
SE_02_085700133 chr9:3467934-3529029 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 133 16 1836 76 1 251 348 RFX3
SE_02_129900074 chr9:3469499-3528624 Sample_02_1299 Liver liver 74 32 1771 73 1 236 348 RFX3
SE_02_118500169 chr9:3472905-3529255 Sample_02_1185 Brain GBM14 169 15 1696 71 1 217 348 RFX3
SE_02_076400269 chr9:3479770-3528128 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 269 17 1445 58 0 210 338 RFX3
SE_02_077600121 chr9:3489794-3530330 Sample_02_0776 Pancreas EndoC-BH1 121 7 1220 47 0 218 151 RFX3
SE_02_049500082 chr9:3491283-3528690 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 82 9 1122 45 0 209 136 RFX3
SE_02_049400155 chr9:3491352-3528307 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 155 11 1110 45 0 209 136 RFX3
SE_02_069700060 chr9:3493076-3532447 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 60 25 1188 50 0 215 136 RFX3
SE_02_129800111 chr9:3493337-3528790 Sample_02_1298 Hilar lymph node Hilar lymph node 111 30 1058 44 0 205 136 RFX3
SE_02_033600011 chr9:3493585-3537054 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 11 2 1328 59 0 223 136 RFX3
SE_02_069800062 chr9:3493730-3527972 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 62 10 1020 44 0 199 136 RFX3
SE_02_068500047 chr9:3493750-3528105 Sample_02_0685 Lung NCI-H1048_no infection 47 13 1024 44 0 199 136 RFX3
SE_02_115400280 chr9:3494309-3528024 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 280 5 1008 44 0 198 136 RFX3
SE_02_096500021 chr9:3494326-3529708 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 21 14 1060 46 0 208 136 RFX3
SE_02_128100052 chr9:3494758-3524791 Sample_02_1281 Lung NCI-H1048_p8-15 52 12 891 39 0 128 0 RFX3
SE_02_130300299 chr9:3494842-3541943 Sample_02_1303 Lymphoma RL_tazemetostat 299 12 1422 63 0 234 136 RFX3
SE_02_031400654 chr9:3495024-3550639 Sample_02_0314 Neuroblastoma SK-N-FI 654 6 1660 76 0 244 136 RFX3
SE_01_007600508 chr9:3495074-3529953 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 508 3 1054 45 0 208 136 RFX3
SE_02_041000051 chr9:3495397-3530378 Sample_02_0410 Brain BT16_NoDox 51 2 1064 44 0 210 136 RFX3
SE_02_011400290 chr9:3495420-3528094 Sample_02_0114 Mammary gland CAL51 290 15 988 41 0 198 136 RFX3
SE_02_030900207 chr9:3495521-3528568 Sample_02_0309 Neuroblastoma SJNB6 207 4 1001 41 0 204 136 RFX3
SE_02_071201447 chr9:3495565-3524921 Sample_02_0712 Pancreas BxPC3_sgNEG 1447 9 874 36 0 132 0 RFX3
SE_00_003300201 chr9:3495589-3528224 Sample_00_0033 Psoas muscle psoas-muscle_3y 201 5 988 41 0 204 136 RFX3
SE_02_051700511 chr9:3495591-3530984 Sample_02_0517 Esophagus TE5 511 20 1074 46 0 212 136 RFX3
SE_02_050600515 chr9:3495591-3530985 Sample_02_0506 Esophagus TE5_1 515 21 1074 46 0 212 136 RFX3
SE_02_040700036 chr9:3495598-3530402 Sample_02_0407 Brain BT16 36 2 1059 44 0 210 136 RFX3
SE_02_101600410 chr9:3495617-3530778 Sample_02_1016 Embryo H9_Mesendoderm_24h 410 9 1070 45 0 212 136 RFX3
SE_02_101701125 chr9:3495629-3528111 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1125 5 983 41 0 198 136 RFX3
SE_02_064501869 chr9:3495771-3512085 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1869 8 512 21 0 66 0 RFX3
SE_02_155400889 chr9:3495800-3528129 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 889 4 979 41 0 199 136 RFX3
SE_02_067200591 chr9:3495850-3529218 Sample_02_0672 Endometrium endometrium cancer_DSG 591 7 1011 41 0 205 136 RFX3
SE_01_009400598 chr9:3495859-3528733 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 598 7 996 41 0 204 136 RFX3
SE_02_122500275 chr9:3495885-3528050 Sample_02_1225 Bone marrow RAJI 275 19 973 41 0 198 136 RFX3
SE_01_009500051 chr9:3495937-3528559 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 51 7 990 41 0 204 136 RFX3
SE_02_085400046 chr9:3496265-3528096 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 46 7 968 41 0 198 136 RFX3
SE_02_107400223 chr9:3496305-3529632 Sample_02_1074 Lymphoma BC-1 223 9 1012 43 0 208 136 RFX3
SE_02_013300212 chr9:3496346-3523728 Sample_02_0133 Thymus TC-797_JQ1_4h 212 7 822 36 0 98 0 RFX3
SE_02_097600118 chr9:3496362-3528900 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 118 9 988 41 0 204 136 RFX3
SE_02_155600539 chr9:3496416-3522445 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 539 5 785 36 0 95 0 RFX3
SE_02_116200739 chr9:3496468-3529099 Sample_02_1162 Stomach YCC11 739 15 990 41 0 205 136 RFX3
SE_02_098400106 chr9:3496516-3528943 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 106 9 986 41 0 204 136 RFX3
SE_02_031000597 chr9:3496687-3528622 Sample_02_0310 Neuroblastoma SJNB8 597 4 975 40 0 204 136 RFX3
SE_02_083800551 chr9:3496720-3510020 Sample_02_0838 Embryo hNPCs_WT 551 5 424 17 0 63 0 RFX3
SE_02_097500104 chr9:3496722-3528933 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 104 10 981 40 0 204 136 RFX3
SE_02_119300366 chr9:3496890-3527925 Sample_02_1193 Brain GBM27 366 8 947 40 0 198 136 RFX3
SE_02_143200335 chr9:3496911-3554168 Sample_02_1432 Bone A673 STAG2 WT 335 13 1712 74 0 264 136 RFX3
SE_02_085500142 chr9:3497059-3529916 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 142 6 1001 42 0 208 136 RFX3
SE_02_117700228 chr9:3497183-3529019 Sample_02_1177 Brain GBM05 228 11 966 40 0 204 136 RFX3
SE_02_006500537 chr9:3497207-3528054 Sample_02_0065 Embryo KO2-Late_G1 537 3 939 40 0 198 136 RFX3
SE_02_096300095 chr9:3497256-3529711 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 95 4 989 42 0 208 136 RFX3
SE_00_001000298 chr9:3497319-3527995 Sample_00_0010 Embryo endodermal-cell 298 5 935 40 0 198 136 RFX3
SE_02_118600688 chr9:3497329-3528715 Sample_02_1186 Brain GBM15 688 7 958 40 0 204 136 RFX3
SE_02_098100112 chr9:3497385-3527923 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 112 6 934 40 0 198 136 RFX3
SE_02_095300210 chr9:3497432-3527759 Sample_02_0953 Brain H3.3K27M_1840 210 7 925 39 0 198 136 RFX3
SE_02_118700402 chr9:3497604-3528723 Sample_02_1187 Brain GBM16 402 10 949 39 0 204 136 RFX3
SE_02_082100035 chr9:3497623-3535070 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 35 8 1165 53 0 218 136 RFX3
SE_02_149200788 chr9:3497625-3529771 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 788 11 981 41 0 207 136 RFX3
SE_02_012500196 chr9:3497721-3528590 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 196 4 944 39 0 203 136 RFX3
SE_02_032000383 chr9:3497756-3535711 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 383 5 1186 54 0 218 136 RFX3
SE_02_148500346 chr9:3497818-3528815 Sample_02_1485 Bone SK-ES-1 346 10 947 39 0 202 136 RFX3
SE_02_097900646 chr9:3497972-3529339 Sample_02_0979 Brain JN14-BS1_H3.3K27M 646 9 961 39 0 190 136 RFX3
SE_02_068900099 chr9:3498029-3529716 Sample_02_0689 Lung NCI-H446_no infection 99 10 970 41 0 188 136 RFX3
SE_02_148000736 chr9:3498234-3529263 Sample_02_1480 Bone MHH-ES-1 736 10 952 39 0 184 136 RFX3
SE_02_079700127 chr9:3498431-3527828 Sample_02_0797 Brain PNMNK1 127 7 903 39 0 177 136 RFX3
SE_02_108400349 chr9:3498465-3513654 Sample_02_1084 Blood KBM7-derived near haploid cells 349 4 484 21 0 48 0 RFX3
SE_02_120000479 chr9:3498638-3528810 Sample_02_1200 Brain GBM36 479 8 925 38 0 183 136 RFX3
SE_02_087500797 chr9:3498798-3530071 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 797 12 962 40 0 183 136 RFX3
SE_02_078400563 chr9:3498931-3529317 Sample_02_0784 Blood OSU-CLL 563 5 935 38 0 173 136 RFX3
SE_02_078200915 chr9:3498943-3530074 Sample_02_0782 Blood MEC1 915 8 958 40 0 176 136 RFX3
SE_02_082200020 chr9:3499292-3529301 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 20 8 926 38 0 166 136 RFX3
SE_02_082300015 chr9:3499363-3529300 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 15 6 925 38 0 166 136 RFX3
SE_02_082000020 chr9:3499527-3530108 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 20 8 943 40 0 169 136 RFX3
SE_02_032100691 chr9:3499585-3529771 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 691 4 927 40 0 169 136 RFX3
SE_02_117400200 chr9:3499827-3528690 Sample_02_1174 Brain GBM02 200 13 882 38 0 165 136 RFX3
SE_02_058000035 chr9:3499893-3543171 Sample_02_0580 Blood HEL_sgSIK3e4 35 12 1311 62 0 196 136 RFX3
SE_02_057600042 chr9:3499904-3543094 Sample_02_0576 Blood HEL_sgLKB1e2 42 13 1310 61 0 196 136 RFX3
SE_02_096700466 chr9:3500008-3529441 Sample_02_0967 Brain H3.3K27M_JN57 466 8 905 40 0 167 136 RFX3
SE_02_117100055 chr9:3500026-3542691 Sample_02_1171 Blood HEL92.1.7_Drug resistant 55 16 1301 60 0 194 136 RFX3
SE_02_057900044 chr9:3500048-3543055 Sample_02_0579 Blood HEL_sgNeg2 44 11 1308 61 0 194 136 RFX3
SE_02_066100304 chr9:3500120-3528171 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 304 9 861 38 0 159 136 RFX3
SE_03_001300865 chr9:3502229-3528502 Sample_03_0013 Lung A549 865 3 797 34 0 162 136 RFX3
SE_02_146800194 chr9:3505888-3553440 Sample_02_1468 Blood HUDEP-2_WT 194 10 1402 62 0 200 136 RFX3
SE_02_010100911 chr9:3506214-3529362 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 911 3 690 28 0 157 136 RFX3
SE_03_001100352 chr9:3506481-3528483 Sample_03_0011 Lung A549_dexamethasone_5h 352 2 648 28 0 154 136 RFX3
SE_02_054500365 chr9:3506484-3529901 Sample_02_0545 Bone marrow K562 WT 365 7 692 30 0 158 136 RFX3
SE_02_113000696 chr9:3506791-3530123 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 696 5 692 30 0 157 136 RFX3
SE_02_062200252 chr9:3506796-3529948 Sample_02_0622 Blood EOL1_Naive 252 5 683 30 0 157 136 RFX3
SE_02_103300569 chr9:3506802-3530036 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 569 4 687 30 0 157 136 RFX3
SE_02_034200770 chr9:3506831-3528976 Sample_02_0342 Liver HSPCs_F0 770 4 650 28 0 153 136 RFX3
SE_02_134600122 chr9:3506953-3530061 Sample_02_1346 Leukophereses leukophereses_p400 122 4 684 30 0 157 136 RFX3
SE_02_102800073 chr9:3506984-3529574 Sample_02_1028 Blood HL-60_WT 73 4 667 30 0 157 136 RFX3
SE_01_001200607 chr9:3506989-3528421 Sample_01_0012 Lung A549_dexamethasone_1h 607 2 632 28 0 153 136 RFX3
SE_02_066000418 chr9:3507008-3528397 Sample_02_0660 Mammary gland MCF10DCIS 418 8 631 28 0 153 136 RFX3
SE_02_034300508 chr9:3507008-3529622 Sample_02_0343 Bone marrow HSPC_A0 508 3 667 30 0 157 136 RFX3
SE_02_088400629 chr9:3507015-3528900 Sample_02_0884 Colon LoVo 629 4 645 28 0 153 136 RFX3
SE_02_146600403 chr9:3507022-3530135 Sample_02_1466 Blood HUDEP-2_BCL11AKO 403 2 685 30 0 157 136 RFX3
SE_04_000200829 chr9:3507035-3534791 Sample_04_0002 Blood cold shocked K562 829 4 841 42 0 168 136 RFX3
SE_02_103400158 chr9:3507048-3530471 Sample_02_1034 Blood AML cell 158 3 700 31 0 159 136 RFX3
SE_02_045900537 chr9:3507123-3529437 Sample_02_0459 Blood ME-1_DMSO_6h 537 6 662 30 0 155 136 RFX3
SE_02_133200580 chr9:3507160-3529748 Sample_02_1332 Blood Monomac6_CTRL 580 3 669 30 0 157 136 RFX3
SE_02_146700247 chr9:3507186-3535313 Sample_02_1467 Blood HUDEP-2_LRFKO 247 4 858 42 0 168 136 RFX3
SE_02_078300883 chr9:3507194-3529360 Sample_02_0783 Blood MEC2 883 4 655 28 0 155 136 RFX3
SE_02_135000611 chr9:3507246-3529254 Sample_02_1350 Leukophereses leukophereses_p456 611 4 647 27 0 154 136 RFX3
SE_02_001600634 chr9:3507257-3530207 Sample_02_0016 Blood erythroblasts 634 3 676 29 0 159 136 RFX3
SE_02_146000327 chr9:3507263-3529409 Sample_02_1460 Blood Mutz-3 327 7 653 28 0 155 136 RFX3
SE_02_043100290 chr9:3507271-3529507 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 290 5 655 29 0 155 136 RFX3
SE_02_143100108 chr9:3507278-3529880 Sample_02_1431 Blood T cell 108 3 665 29 0 157 136 RFX3
SE_02_098800934 chr9:3507280-3529360 Sample_02_0988 Blood K562_EPZ 934 8 651 27 0 155 136 RFX3
SE_02_098700681 chr9:3507287-3529254 Sample_02_0987 Blood K562_Control_1 681 7 646 27 0 154 136 RFX3
SE_02_058100546 chr9:3507297-3529691 Sample_02_0581 Blood MOLM13_empty_HG 546 5 659 29 0 157 136 RFX3
SE_02_117000068 chr9:3507324-3542472 Sample_02_1170 Blood HEL92.1.7 68 12 1043 48 0 183 136 RFX3
SE_02_083301009 chr9:3507333-3529493 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1009 5 654 29 0 155 136 RFX3
SE_01_002100841 chr9:3507343-3528589 Sample_01_0021 Skin bipolar-neuron 841 3 626 27 0 153 136 RFX3
SE_02_046000530 chr9:3507353-3529364 Sample_02_0460 Blood ME-1_I-10-49_6h 530 4 651 27 0 155 136 RFX3
SE_02_050100348 chr9:3507370-3529304 Sample_02_0501 Blood HL-60_CTRL 348 4 648 27 0 154 136 RFX3
SE_02_050200406 chr9:3507377-3529284 Sample_02_0502 Blood HL-60_PMA_16h 406 5 646 27 0 154 136 RFX3
SE_02_036300600 chr9:3507441-3529169 Sample_02_0363 Haematopoietic and lymphoid tissue 697 600 3 642 27 0 154 136 RFX3
SE_02_083501162 chr9:3507482-3529458 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1162 5 653 29 0 155 136 RFX3
SE_02_040800412 chr9:3507491-3528799 Sample_02_0408 Kidney G401_Dox 412 3 631 27 0 153 136 RFX3
SE_02_054700145 chr9:3507523-3529466 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 145 5 653 29 0 155 136 RFX3
SE_02_057500473 chr9:3507648-3529495 Sample_02_0575 Blood MOLM13_sgLKB1e2 473 4 646 29 0 155 136 RFX3
SE_02_040900418 chr9:3507670-3528351 Sample_02_0409 Kidney G401_NoDox 418 3 611 27 0 153 136 RFX3
SE_02_128001018 chr9:3507686-3528155 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1018 9 603 27 0 148 136 RFX3
SE_02_117600086 chr9:3507806-3528868 Sample_02_1176 Brain GBM04 86 3 624 27 0 153 136 RFX3
SE_02_057700520 chr9:3507937-3529787 Sample_02_0577 Blood MOLM13_empty 520 4 644 29 0 157 136 RFX3
SE_02_067400577 chr9:3507978-3529137 Sample_02_0674 Endometrium E1_FA 577 6 623 27 0 154 136 RFX3
SE_02_147600660 chr9:3508199-3528317 Sample_02_1476 Bone EW-1 660 3 593 25 0 153 136 RFX3
SE_02_072100850 chr9:3508269-3528012 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 850 5 580 25 0 147 136 RFX3
SE_01_008400585 chr9:3508547-3529476 Sample_01_0084 Spleen spleen 585 3 621 26 0 155 136 RFX3
SE_02_074600238 chr9:3508905-3528162 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 238 3 563 24 0 143 136 RFX3
SE_00_004500336 chr9:3521915-3528438 Sample_00_0045 Thymus thymus 336 2 203 6 0 119 136 RFX3
SE_02_139100477 chr9:3521961-3530755 Sample_02_1391 Peripheral blood FE-PD_ALK- 477 1 278 9 0 127 136 RFX3
SE_02_096200384 chr9:3522190-3529342 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 384 1 228 5 0 120 136 RFX3
SE_02_122300714 chr9:3522292-3528848 Sample_02_1223 Bone marrow KMS28BM 714 4 206 5 0 110 136 RFX3
SE_02_097200246 chr9:3522368-3528718 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 246 2 200 5 0 109 136 RFX3
SE_02_120200505 chr9:3522424-3528928 Sample_02_1202 Brain GBM38 505 4 205 5 0 109 136 RFX3
SE_02_029600401 chr9:3522561-3529820 Sample_02_0296 Neuroblastoma CLB-BER-Lud 401 1 231 7 0 113 136 RFX3
SE_02_017101023 chr9:3522875-3528291 Sample_02_0171 Lung IMR-90_proliferating 1023 1 173 5 0 109 136 RFX3
SE_02_132500208 chr9:3522894-3528185 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 208 4 167 5 0 106 136 RFX3
SE_02_143000045 chr9:3523308-3529790 Sample_02_1430 Blood Kasumi-3_mock-infected 45 1 203 7 0 110 136 RFX3
SE_02_093100441 chr9:3523315-3528956 Sample_02_0931 Embryo H9 UTXKO 441 3 176 5 0 106 136 RFX3
SE_02_024200881 chr9:3523384-3528938 Sample_02_0242 Colon V481 881 1 175 5 0 106 136 RFX3
SE_00_000700261 chr9:3523465-3529930 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 261 1 204 7 0 110 136 RFX3
SE_02_097300177 chr9:3523469-3527984 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 177 1 143 5 0 100 136 RFX3
SE_02_061700580 chr9:3523478-3529024 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 580 1 173 5 0 107 136 RFX3
SE_02_122000650 chr9:3523498-3529063 Sample_02_1220 Bone marrow JJN3 650 3 176 5 0 107 136 RFX3
SE_02_013800212 chr9:3523498-3530380 Sample_02_0138 Brain RT172 212 1 223 8 0 112 136 RFX3
SE_02_138600727 chr9:3523562-3529465 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 727 2 189 7 0 108 136 RFX3
SE_02_096000335 chr9:3523658-3529064 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 335 2 171 5 0 107 136 RFX3
SE_00_000900171 chr9:3523671-3530294 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 171 1 213 7 0 112 136 RFX3
SE_02_126300402 chr9:3523698-3528228 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 402 1 147 5 0 106 136 RFX3
SE_02_096800398 chr9:3523700-3527876 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 398 1 135 5 0 100 136 RFX3
SE_02_095900147 chr9:3523706-3528131 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 147 2 144 5 0 101 136 RFX3
SE_02_023600483 chr9:3523742-3528306 Sample_02_0236 Colon V206 483 2 150 5 0 106 136 RFX3
SE_00_000800286 chr9:3523786-3529905 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 286 1 196 7 0 110 136 RFX3
SE_02_129000167 chr9:3523957-3529750 Sample_02_1290 Lung NCI-H69_p8-15 167 2 187 7 0 109 136 RFX3
SE_02_071900884 chr9:3523983-3528780 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 884 2 157 5 0 101 136 RFX3
SE_00_004400225 chr9:3524001-3530313 Sample_00_0044 Cord blood T-cell 225 1 206 7 0 107 136 RFX3
SE_02_117900493 chr9:3524004-3528908 Sample_02_1179 Brain GBM08 493 2 159 5 0 101 136 RFX3
SE_00_002700139 chr9:3524035-3529576 Sample_00_0027 Blood natural-killer-cell 139 1 180 7 0 102 136 RFX3
SE_01_002000573 chr9:3524039-3529799 Sample_01_0020 Blood B-cell 573 1 186 7 0 102 136 RFX3
SE_02_109600562 chr9:3524049-3529733 Sample_02_1096 Blood CD34 Erythroid cells_Don003 562 1 185 7 0 101 136 RFX3
SE_00_002500458 chr9:3524099-3528266 Sample_00_0025 Muscle of leg muscle-of-leg 458 1 139 5 0 96 136 RFX3
SE_02_014800098 chr9:3524127-3529029 Sample_02_0148 Blood CD8_T_cells 98 1 157 5 0 97 136 RFX3
SE_00_003800408 chr9:3524130-3527952 Sample_00_0038 Spinal cord spinal-cord_108d 408 1 127 5 0 90 136 RFX3
SE_02_002600170 chr9:3524151-3529249 Sample_02_0026 Blood CD4donorE 170 2 166 5 0 97 136 RFX3
SE_01_003700861 chr9:3524153-3528096 Sample_01_0037 Liver hepatocyte 861 1 130 5 0 90 136 RFX3
SE_00_000301166 chr9:3524165-3528273 Sample_00_0003 Adrenal gland adrenal-gland_97d 1166 1 139 5 0 95 136 RFX3
SE_02_135900583 chr9:3524174-3528005 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 583 1 125 5 0 89 136 RFX3
SE_00_002001641 chr9:3524176-3528360 Sample_00_0020 Large intestine large-intestine_108d 1641 1 140 5 0 95 136 RFX3
SE_00_000500268 chr9:3524176-3529109 Sample_00_0005 Blood B-cell 268 1 159 5 0 96 136 RFX3
SE_02_098200189 chr9:3524214-3529016 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 189 1 155 5 0 94 136 RFX3
SE_00_002600208 chr9:3524241-3528163 Sample_00_0026 Muscle of trunk muscle-of-trunk 208 1 130 5 0 90 136 RFX3
SE_00_003601047 chr9:3524267-3528433 Sample_00_0036 Small intestine small-intestine_108days 1047 1 138 5 0 94 136 RFX3
SE_02_136300347 chr9:3524267-3529106 Sample_02_1363 Blood Hudep2 347 1 157 5 0 95 136 RFX3
SE_02_096400031 chr9:3524268-3529525 Sample_02_0964 Brain H3.3K27M_HSJ019-Tumor-Rx_brain 31 2 172 7 0 96 136 RFX3
SE_02_118900282 chr9:3524284-3528089 Sample_02_1189 Brain GBM22 282 1 127 5 0 88 136 RFX3
SE_02_018200794 chr9:3524294-3529549 Sample_02_0182 melanoma LOX-IMVI 794 1 173 7 0 98 136 RFX3
SE_02_126400736 chr9:3524305-3528004 Sample_02_1264 Bone Im-GCT-4072_G34W KO 736 1 123 5 0 88 136 RFX3
SE_00_004700195 chr9:3524313-3529318 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 195 2 167 5 0 95 136 RFX3
SE_02_141700330 chr9:3524314-3528027 Sample_02_1417 Brain SF7761 330 1 123 5 0 88 136 RFX3
SE_02_002200181 chr9:3524319-3529473 Sample_02_0022 Blood CD8donorA 181 3 172 7 0 96 136 RFX3
SE_00_001800348 chr9:3524321-3528229 Sample_00_0018 Dermal fibroblasts iPS-18axian 348 1 132 5 0 94 136 RFX3
SE_01_007901043 chr9:3524375-3529350 Sample_01_0079 Peyers patch Peyers-patch 1043 1 168 5 0 95 136 RFX3
SE_02_068800129 chr9:3524386-3528767 Sample_02_0688 Lung NCI-H211_no infection 129 1 149 5 0 93 136 RFX3
SE_00_003900415 chr9:3524389-3528965 Sample_00_0039 Spleen spleen_3y 415 1 152 5 0 93 136 RFX3
SE_02_035500380 chr9:3524417-3528195 Sample_02_0355 Colon HCT15 380 1 131 5 0 90 136 RFX3
SE_02_023700573 chr9:3524422-3528066 Sample_02_0237 Colon V389 573 1 127 5 0 84 136 RFX3
SE_01_006000164 chr9:3524423-3528009 Sample_01_0060 Embryo radial-glial-cell 164 1 123 5 0 84 136 RFX3
SE_02_094400080 chr9:3524423-3528062 Sample_02_0944 Brain TS576 80 1 127 5 0 84 136 RFX3
SE_02_016600264 chr9:3524426-3528270 Sample_02_0166 Mammary gland HCC1954_Parental 264 1 134 5 0 88 136 RFX3
SE_02_016700180 chr9:3524426-3528270 Sample_02_0167 Mammary gland HCC1954_LCC2 180 1 134 5 0 88 136 RFX3
SE_02_055500621 chr9:3524434-3529182 Sample_02_0555 Other HAP1_WT 621 1 160 5 0 89 136 RFX3
SE_00_004300418 chr9:3524441-3528218 Sample_00_0043 Stomach stomach_96d 418 1 130 5 0 88 136 RFX3
SE_02_039500447 chr9:3524444-3528118 Sample_02_0395 Mammary gland BT-549 447 1 127 5 0 82 136 RFX3
SE_02_097100966 chr9:3524455-3529271 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 966 1 160 5 0 89 136 RFX3
SE_02_059100108 chr9:3524482-3528900 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 108 2 149 5 0 87 136 RFX3
SE_02_105600589 chr9:3524488-3528034 Sample_02_1056 Esophagus ChTRT 589 1 121 5 0 81 136 RFX3
SE_01_010400994 chr9:3524488-3528913 Sample_01_0104 Lung upper lobe of left lung 994 2 148 5 0 87 136 RFX3
SE_02_034600260 chr9:3524501-3528180 Sample_02_0346 Blood AML10 260 1 126 5 0 83 136 RFX3
SE_00_004000321 chr9:3524501-3528782 Sample_00_0040 Spleen spleen_30y 321 2 145 5 0 86 136 RFX3
SE_01_009900866 chr9:3524521-3528159 Sample_01_0099 Colon transverse colon 866 1 124 5 0 82 136 RFX3
SE_02_004600139 chr9:3524549-3528032 Sample_02_0046 Embryo endodermal CyT49_ES_D10 139 2 119 5 0 80 136 RFX3
SE_02_003201054 chr9:3524580-3527533 Sample_02_0032 Pancreas pancreatic-islets-M 1054 1 106 5 0 78 136 RFX3
SE_00_002200454 chr9:3524592-3527961 Sample_00_0022 Lung lung_30y 454 1 116 5 0 77 136 RFX3
SE_02_001900455 chr9:3524606-3527737 Sample_02_0019 Embryo Neural crest cells 455 1 109 5 0 77 136 RFX3
SE_02_135800644 chr9:3524649-3528217 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 644 1 122 5 0 83 136 RFX3
SE_02_032800470 chr9:3524690-3528159 Sample_02_0328 Embryo H9_naive 470 1 116 5 0 78 136 RFX3
SE_02_064501114 chr9:3524711-3528007 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1114 1 109 5 0 74 136 RFX3
SE_02_001800598 chr9:3524754-3528911 Sample_02_0018 Embryo NEC 598 1 138 5 0 78 136 RFX3
SE_02_126800281 chr9:3524805-3528745 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 281 2 133 5 0 74 136 RFX3
SE_01_005100361 chr9:3524827-3528384 Sample_01_0051 Embryo neural-progenitor-cell 361 1 122 5 0 72 136 RFX3
SE_00_001600083 chr9:3524830-3527762 Sample_00_0016 Foreskin iPS-DF-19.11 88 1 101 5 0 66 136 RFX3
SE_02_139300729 chr9:3524831-3528659 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 729 1 128 5 0 72 136 RFX3
SE_01_003300299 chr9:3524878-3527999 Sample_01_0033 Embryo H9 299 1 106 5 0 66 136 RFX3
SE_02_109400040 chr9:3524880-3528958 Sample_02_1094 Embryo H9_0Dox 40 2 135 5 0 72 136 RFX3
SE_02_001700726 chr9:3524889-3527652 Sample_02_0017 Embryo H9_ESC 726 1 97 5 0 66 136 RFX3
SE_02_003900581 chr9:3524892-3528145 Sample_02_0039 Embryo AFG 581 1 112 5 0 67 136 RFX3
SE_01_010701417 chr9:3524902-3528766 Sample_01_0107 Esophagus esophagus squamous epithelium 1417 2 132 5 0 72 136 RFX3
SE_02_004001000 chr9:3524922-3528122 Sample_02_0040 Embryo PFG 1000 1 112 5 0 66 136 RFX3
SE_02_086000597 chr9:3524926-3528017 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 597 1 106 5 0 66 136 RFX3
SE_02_081901092 chr9:3524926-3528269 Sample_02_0819 Ovary Mucinous ovarian cancer 1092 1 118 5 0 72 136 RFX3
SE_00_000600599 chr9:3524944-3527879 Sample_00_0006 Blood CD14-positive-monocyte 599 1 103 5 0 66 136 RFX3
SE_02_057400443 chr9:3524948-3529558 Sample_02_0574 Blood MOLM-13_sgNeg2 443 1 156 7 0 76 136 RFX3
SE_02_081600928 chr9:3524960-3528820 Sample_02_0816 Ovary Clear cell ovarian cancer 928 1 134 5 0 72 136 RFX3
SE_02_004500190 chr9:3524994-3527689 Sample_02_0045 Embryo endodermal CyT49_ES_D7 190 2 95 5 0 66 136 RFX3
SE_00_001200684 chr9:3524999-3527665 Sample_00_0012 Embryo H1-hESC 684 1 95 5 0 66 136 RFX3
SE_02_033000840 chr9:3525001-3528001 Sample_02_0330 Endoderm MHG 840 1 103 5 0 66 136 RFX3
SE_02_004400423 chr9:3525004-3527560 Sample_02_0044 Embryo endodermal CyT49_ES_D5 423 1 93 5 0 66 136 RFX3
SE_02_109500506 chr9:3525015-3529317 Sample_02_1095 Blood CD34 Erythroid cells_Don002 506 1 147 5 0 73 136 RFX3
SE_02_004800674 chr9:3525019-3527878 Sample_02_0048 Embryo endodermal CyT49_HE 674 1 100 5 0 66 136 RFX3
SE_02_058200661 chr9:3525021-3529684 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 661 1 156 7 0 76 136 RFX3
SE_02_057800423 chr9:3525029-3529747 Sample_02_0578 Blood MOLM-13_sgSIK3e4 423 2 158 7 0 76 136 RFX3
SE_02_134900296 chr9:3525030-3529518 Sample_02_1349 Leukophereses leukophereses_p411 296 1 152 7 0 74 136 RFX3
SE_02_003801316 chr9:3525149-3527920 Sample_02_0038 Embryo DE 1316 1 102 5 0 65 136 RFX3
SE_00_004200688 chr9:3525162-3527669 Sample_00_0042 Stomach stomach_30y 688 1 93 5 0 65 136 RFX3
SE_02_093300401 chr9:3525232-3528012 Sample_02_0933 Embryo H7 UTXKO 401 1 99 5 0 60 136 RFX3
SE_02_134200235 chr9:3525873-3529095 Sample_02_1342 Blood NB4 235 1 118 5 0 40 77 RFX3
SE_02_099300867 chr9:3525933-3529429 Sample_02_0993 Blood MOLM-13_empty 867 1 132 7 0 37 73 RFX3

Genomic distribution of SEs associated with RFX3

The strength of the tissue affected by the gene


Expression of RFX3