SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000134453
Gene: RBM17 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:6089034-6117457 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139200021 chr10:6001670-6096050 Sample_02_1392 Peripheral blood Mac-2A_ALK- 21 36 2783 185 44 106 1176 RBM17,IL2RA,IL15RA,PFKFB3
SE_02_156000078 chr10:6008417-6102391 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 78 25 2772 184 44 115 1289 RBM17,IL2RA,IL15RA,MIR3155A,MIR3155B,PFKFB3
SE_02_013200014 chr10:6009185-6092133 Sample_02_0132 Lung 1015_CL 14 11 2428 168 43 103 1176 RBM17,IL2RA,IL15RA
SE_02_012600024 chr10:6009185-6110945 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 24 13 3000 193 43 128 1502 RBM17,IL2RA,MIR3155,IL15RA,PFKFB3
SE_02_111900235 chr10:6013462-6092092 Sample_02_1119 Blood KBM7 235 30 2295 159 42 95 901 RBM17,IL2RA,IL15RA
SE_02_078100130 chr10:6015153-6103103 Sample_02_0781 Lymphoma Pfeiffer_DMSO 130 25 2601 175 41 106 1014 RBM17,IL2RA,IL15RA,MIR3155A,MIR3155B,PFKFB3
SE_02_083300170 chr10:6030722-6092381 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 170 19 1795 122 37 88 425 RBM17,IL2RA
SE_02_012700030 chr10:6033851-6092270 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 30 12 1700 118 37 88 425 RBM17,IL2RA
SE_02_013100016 chr10:6033851-6092270 Sample_02_0131 Lung 1015_PT 16 13 1700 118 37 88 425 RBM17,IL2RA
SE_02_087501023 chr10:6034963-6106603 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 1023 20 2085 134 37 104 628 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3,FBXO18
SE_01_005500259 chr10:6036436-6102429 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 259 8 1945 124 36 96 538 RBM17,IL2RA,PFKFB3,MIR3155
SE_02_023400716 chr10:6036627-6142555 Sample_02_0234 Tonsil Th17 716 18 3165 209 46 147 1158 RBM17,IL2RA,PFKFB3,MIR3155
SE_01_005300186 chr10:6036997-6109310 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 186 11 2115 131 36 107 696 RBM17,IL2RA,PFKFB3,MIR3155
SE_02_099800120 chr10:6037448-6102005 Sample_02_0998 Lymphoma OCI-LY1_DMSO 120 30 1899 122 36 96 538 RBM17,IL2RA,PFKFB3
SE_02_149200747 chr10:6037609-6106597 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 747 18 1992 123 35 104 628 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_02_099900139 chr10:6037777-6102030 Sample_02_0999 Lymphoma OCI-LY1_966 139 29 1887 121 35 96 538 RBM17,IL2RA,PFKFB3
SE_02_011900065 chr10:6043882-6101497 Sample_02_0119 Haematopoietic and lymphoid tissue PFEIFFER 65 29 1720 105 30 95 532 RBM17,IL2RA,PFKFB3
SE_02_083500355 chr10:6044278-6096300 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 355 12 1551 98 29 83 425 RBM17,IL2RA,PFKFB3
SE_02_045700019 chr10:6044465-6091516 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 19 16 1372 87 27 83 425 RBM17,IL2RA
SE_02_082601206 chr10:6044994-6092087 Sample_02_0826 Stomach gastric tumor 1206 13 1388 89 27 83 425 RBM17,IL2RA
SE_02_077900148 chr10:6046367-6109091 Sample_02_0779 Lymphoma U2932 148 23 1863 109 26 106 696 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_02_130400573 chr10:6048554-6109414 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 573 15 1812 106 22 106 696 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_02_088901450 chr10:6049571-6093083 Sample_02_0889 Heart left ventricle_LV1183 1450 10 1295 85 22 83 425 RBM17,IL2RA
SE_02_089000827 chr10:6049857-6092287 Sample_02_0890 Heart left ventricle_LV1200 827 10 1266 82 22 83 425 RBM17,IL2RA
SE_02_088801152 chr10:6050259-6125078 Sample_02_0888 Heart left ventricle_LV1160 1152 19 2206 132 21 139 1158 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_02_092001109 chr10:6050509-6091906 Sample_02_0920 Heart left ventricle_DCM_LV1535 1109 12 1221 78 20 83 425 RBM17,IL2RA
SE_02_128000847 chr10:6083179-6142047 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 847 16 1786 113 10 81 1039 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_01_002100368 chr10:6085622-6105559 Sample_01_0021 Skin bipolar-neuron 368 4 575 32 0 29 472 RBM17,IL2RA,PFKFB3,MIR3155
SE_02_101701595 chr10:6085896-6137123 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1595 11 1531 93 10 76 1039 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_02_006400477 chr10:6089333-6109942 Sample_02_0064 Embryo DN-Early_G1 477 5 629 31 0 27 436 RBM17,IL2RA,PFKFB3,MIR3155
SE_02_006500503 chr10:6089364-6110624 Sample_02_0065 Embryo KO2-Late_G1 503 4 651 31 0 27 470 RBM17,IL2RA,PFKFB3,MIR3155
SE_02_017201213 chr10:6103404-6172941 Sample_02_0172 Lung IMR-90_quiescent 1213 12 2318 97 11 104 958 RBM17,MIR3155,PFKFB3,IL2RA
SE_00_004000152 chr10:6103663-6208261 Sample_00_0040 Spleen spleen_30y 152 23 3561 113 14 155 1185 PFKFB3,RBM17,MIR3155,IL2RA
SE_02_045600334 chr10:6108967-6148887 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 334 9 1251 86 10 77 724 RBM17,PFKFB3,IL2RA,MIR3155A,MIR3155B
SE_02_045400412 chr10:6109066-6148839 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 412 12 1247 86 10 77 724 RBM17,PFKFB3,IL2RA,MIR3155A,MIR3155B
SE_02_114500929 chr10:6112166-6140914 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 929 18 881 64 10 38 389 RBM17,IL2RA,MIR3155A,MIR3155B,PFKFB3
SE_00_000300257 chr10:6114314-6203492 Sample_00_0003 Adrenal gland adrenal-gland_97d 257 17 3044 94 14 124 807 PFKFB3,RBM17,MIR3155
Genomic distribution of SEs associated with RBM17
Genome Browser

The strength of the tissue affected by the gene

Expression of RBM17

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)