SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000269386
Gene: RAB11B-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr19:8374373-8390685 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_046500600 chr19:8348041-8375756 Sample_02_0465 Adipose subcutaneous adipocytes 600 13 825 69 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_116900745 chr19:8352145-8375229 Sample_02_1169 Biliary H69_TGF beta_16h_2 745 7 665 54 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_116600787 chr19:8352255-8375982 Sample_02_1166 Biliary H69_TGF beta_16h_1 787 15 700 57 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153700337 chr19:8354142-8380578 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 337 9 813 64 3 63 941 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_053000985 chr19:8354231-8375202 Sample_02_0530 Mammary gland MCF10A 985 12 605 49 3 63 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_072500592 chr19:8355335-8374710 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 592 5 552 40 3 63 879 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_076500507 chr19:8385290-8398404 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 507 1 415 51 0 58 302 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_01_010100864 chr19:8385423-8395383 Sample_01_0101 Pancreas pancreas_54y 864 1 327 40 0 53 302 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_044500938 chr19:8387846-8392672 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 938 1 157 21 0 42 302 RAB11B,RAB11B-AS1,MIR4999,ANGPTL4,MARCH2,KANK3
SE_02_146900688 chr19:8389402-8397799 Sample_02_1469 Umbilical Vein HUVEC 688 1 239 27 0 58 276 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_147100758 chr19:8389410-8397899 Sample_02_1471 Blood Outgrowth Endothelia BOEC 758 1 240 28 0 58 274 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_121300648 chr19:8389468-8399741 Sample_02_1213 Brain GBM31 648 2 301 38 0 61 274 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_117300469 chr19:8389535-8398787 Sample_02_1173 Brain GBM01 469 1 265 35 0 58 262 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_120300834 chr19:8390196-8398865 Sample_02_1203 Brain NB1 834 1 245 32 0 50 195 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_119600971 chr19:8390255-8398697 Sample_02_1196 Brain GBM32 971 2 239 30 0 50 182 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
Genomic distribution of SEs associated with RAB11B-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of RAB11B-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)