SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000105287
Gene: PRKD2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:46674275-46717127 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_151000252 chr19:46681995-46736116 Sample_02_1510 Lung H3122_LR_Pano 252 23 1633 157 13 226 3604 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,GNG8,FKRP,SLC1A5
SE_02_104801646 chr19:46683448-46705088 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1646 11 617 63 7 56 1081 PRKD2,DACT3,DACT3-AS1,MIR320E,GNG8,FKRP,STRN4
SE_02_122400594 chr19:46691231-46742891 Sample_02_1224 Bone marrow normal plasma cell 594 13 1609 138 13 248 3672 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,SLC1A5,FKRP
SE_02_103900216 chr19:46691638-46723177 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 216 4 928 91 10 154 2365 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,FKRP
SE_02_102900887 chr19:46692525-46719884 Sample_02_1029 Colon HCT116 887 11 785 76 8 118 1653 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,FKRP
SE_02_155300330 chr19:46693721-46741046 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 330 17 1480 131 9 242 3544 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,SLC1A5,FKRP
SE_02_121900176 chr19:46704724-46728860 Sample_02_1219 Bone marrow H929 176 5 733 75 5 156 2296 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,FKRP
SE_02_122700723 chr19:46704755-46720180 Sample_02_1227 Bone marrow U266 723 3 410 44 4 78 1079 PRKD2,MIR320E,STRN4,DACT3,DACT3-AS1,FKRP
SE_02_153000865 chr19:46711388-46744039 Sample_02_1530 Peripheral blood neutrophils_0BA0X 865 10 1044 86 4 196 2695 PRKD2,STRN4,MIR320E,DACT3-AS1,SLC1A5,FKRP,DACT3,GNG8
SE_02_111900488 chr19:46711422-46734532 Sample_02_1119 Blood KBM7 488 8 733 67 3 165 2333 PRKD2,STRN4,MIR320E,DACT3-AS1,FKRP
SE_02_101701216 chr19:46711425-46741752 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1216 11 965 82 4 196 2695 PRKD2,STRN4,MIR320E,DACT3-AS1,SLC1A5,FKRP
SE_02_088601272 chr19:46711825-46740989 Sample_02_0886 Skin foreskin_ p63KLF4 1272 7 923 79 3 196 2695 PRKD2,STRN4,MIR320E,SLC1A5,FKRP
SE_02_033600560 chr19:46712153-46739029 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 560 5 863 73 3 185 2614 PRKD2,STRN4,SLC1A5,FKRP,MIR320E
SE_02_058500905 chr19:46712215-46732524 Sample_02_0585 Umbilical vein HUVEC 0hour 905 7 635 57 3 157 2211 PRKD2,STRN4,FKRP,MIR320E
SE_02_017600456 chr19:46712227-46728891 Sample_02_0176 Peripheral blood LOUCY 456 3 515 53 2 151 2091 PRKD2,STRN4,FKRP,MIR320E
SE_02_083700693 chr19:46712268-46734523 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 693 6 703 64 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_02_066900604 chr19:46712599-46718302 Sample_02_0669 Prostate prostate cancer_DSG 604 1 118 17 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_062900208 chr19:46712762-46729087 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 208 2 505 52 2 151 2113 PRKD2,STRN4,FKRP,MIR320E
SE_02_063000397 chr19:46712766-46728901 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 397 4 499 51 2 151 2093 PRKD2,STRN4,FKRP,MIR320E
SE_01_009000893 chr19:46712905-46738709 Sample_01_0090 Lung upper-lobe-of-left-lung 893 5 831 70 3 174 2550 PRKD2,STRN4,SLC1A5,FKRP,MIR320E
SE_02_083300373 chr19:46712989-46734520 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 373 8 683 62 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_01_008400809 chr19:46712992-46724248 Sample_01_0084 Spleen spleen 809 1 319 38 2 110 1482 PRKD2,STRN4,FKRP,MIR320E
SE_02_057600289 chr19:46713055-46727204 Sample_02_0576 Blood HEL_sgLKB1e2 289 1 438 50 2 120 1735 PRKD2,STRN4,FKRP,MIR320E
SE_02_061700692 chr19:46713055-46732040 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 692 4 599 54 3 157 2211 PRKD2,STRN4,FKRP,MIR320E
SE_01_004400650 chr19:46713131-46724107 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 650 1 309 38 2 110 1482 PRKD2,STRN4,FKRP,MIR320E
SE_02_057900353 chr19:46713195-46720954 Sample_02_0579 Blood HEL_sgNeg2 353 1 186 23 1 78 1068 PRKD2,STRN4,FKRP,MIR320E
SE_00_003901066 chr19:46713202-46720494 Sample_00_0039 Spleen spleen_3y 1066 1 173 21 1 73 964 PRKD2,STRN4,FKRP,MIR320E
SE_02_058000397 chr19:46713209-46723954 Sample_02_0580 Blood HEL_sgSIK3e4 397 1 303 35 2 110 1482 PRKD2,STRN4,FKRP,MIR320E
SE_02_083600719 chr19:46713212-46734361 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 719 6 676 61 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_02_035300691 chr19:46713221-46734311 Sample_02_0353 Colon HT29 691 4 674 61 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_02_063100477 chr19:46713280-46728878 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 477 2 490 50 2 151 2087 PRKD2,STRN4,FKRP,MIR320E
SE_02_022100432 chr19:46713294-46724130 Sample_02_0221 Blood CCRF-CEM 432 1 311 37 2 110 1482 PRKD2,STRN4,FKRP,MIR320E
SE_02_059100455 chr19:46713299-46718883 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 455 1 124 15 1 68 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_083500636 chr19:46713324-46734248 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 636 6 668 59 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_02_122100385 chr19:46713334-46719451 Sample_02_1221 Bone marrow KMS11 385 2 142 18 1 69 688 PRKD2,FKRP,MIR320E,STRN4
SE_02_122300654 chr19:46713349-46720052 Sample_02_1223 Bone marrow KMS28BM 654 2 160 19 1 72 846 PRKD2,STRN4,FKRP,MIR320E
SE_01_010400673 chr19:46713353-46738118 Sample_01_0104 Lung upper lobe of left lung 673 7 801 68 3 170 2472 PRKD2,STRN4,MIR320E,SLC1A5,FKRP
SE_01_010701336 chr19:46713368-46718933 Sample_01_0107 Esophagus esophagus squamous epithelium 1336 1 123 15 1 68 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_065000058 chr19:46713371-46722579 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 58 2 250 33 2 98 1255 PRKD2,STRN4,FKRP,MIR320E
SE_02_155700355 chr19:46713406-46728859 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 355 3 484 50 2 151 2080 PRKD2,STRN4,FKRP,MIR320E
SE_02_130901193 chr19:46713411-46731157 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1193 4 552 52 2 156 2211 PRKD2,STRN4,FKRP,MIR320E
SE_02_075800607 chr19:46713433-46730331 Sample_02_0758 Peripheral blood REH 607 6 532 52 2 151 2113 PRKD2,STRN4,FKRP,MIR320E
SE_02_116801035 chr19:46713473-46741656 Sample_02_1168 Biliary H69_TGF Vehicle_2 1035 17 905 76 4 196 2695 PRKD2,STRN4,MIR320E,SLC1A5,FKRP
SE_02_064500265 chr19:46713483-46718109 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 265 1 97 13 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_078200960 chr19:46713504-46720607 Sample_02_0782 Blood MEC1 960 1 169 21 1 74 996 PRKD2,STRN4,FKRP,MIR320E
SE_02_064400120 chr19:46713508-46717799 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 120 1 92 12 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_137100574 chr19:46713510-46717796 Sample_02_1371 Pancreas Patu899S-untreated 574 1 92 12 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_005600654 chr19:46713512-46739896 Sample_02_0056 Mammary gland HMEC 654 7 858 73 3 196 2627 PRKD2,STRN4,SLC1A5,FKRP,MIR320E
SE_02_121800967 chr19:46713555-46719656 Sample_02_1218 Bone marrow Daudi 967 2 145 18 1 72 736 PRKD2,STRN4,FKRP,MIR320E
SE_02_081700933 chr19:46713566-46719967 Sample_02_0817 Ovary Epithelial ovarian cancer 933 2 152 18 1 72 819 PRKD2,STRN4,FKRP,MIR320E
SE_02_136600589 chr19:46713567-46717827 Sample_02_1366 Pancreas BxPC3-untreated 589 1 91 12 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_126400891 chr19:46713567-46737116 Sample_02_1264 Bone Im-GCT-4072_G34W KO 891 6 760 65 3 169 2436 PRKD2,STRN4,MIR320E,FKRP,SLC1A5
SE_02_081601747 chr19:46713620-46734244 Sample_02_0816 Ovary Clear cell ovarian cancer 1747 5 661 59 3 165 2333 PRKD2,STRN4,FKRP,MIR320E
SE_02_064600207 chr19:46713628-46717766 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 207 1 90 12 0 55 655 PRKD2,FKRP,MIR320E,STRN4
SE_02_067401123 chr19:46713691-46717733 Sample_02_0674 Endometrium E1_FA 1123 1 88 12 0 55 650 PRKD2,FKRP,MIR320E,STRN4
SE_02_064700968 chr19:46713697-46731645 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 968 4 566 53 3 157 2206 PRKD2,STRN4,FKRP,MIR320E
SE_02_078300578 chr19:46713734-46720640 Sample_02_0783 Blood MEC2 578 1 164 21 1 74 984 PRKD2,STRN4,FKRP,MIR320E
SE_02_064800361 chr19:46713805-46731738 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 361 4 567 52 3 157 2179 PRKD2,STRN4,FKRP,MIR320E
SE_02_064900170 chr19:46713812-46722750 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 170 2 253 32 2 98 1258 PRKD2,STRN4,FKRP,MIR320E
SE_02_065100137 chr19:46713819-46717745 Sample_02_0651 Tracheobronchial epithelial HTBE_H3N2_18h 137 1 84 11 0 55 616 PRKD2,FKRP,MIR320E,STRN4
SE_02_065400096 chr19:46713824-46717017 Sample_02_0654 Tracheobronchial epithelial HTBE_H5N1_06h 96 1 62 10 0 50 520 PRKD2,FKRP,MIR320E,STRN4
SE_02_135101004 chr19:46713849-46718388 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1004 1 94 13 0 55 600 PRKD2,FKRP,MIR320E,STRN4
SE_02_123000872 chr19:46713872-46734306 Sample_02_1230 Lung PC9 872 5 659 59 3 164 2272 PRKD2,STRN4,FKRP,MIR320E
SE_02_125000346 chr19:46713882-46726968 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 346 5 409 45 2 118 1670 PRKD2,STRN4,FKRP,MIR320E
SE_02_124900271 chr19:46713882-46730612 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 271 10 525 50 2 150 2058 PRKD2,STRN4,FKRP,MIR320E
SE_02_065200918 chr19:46713895-46731906 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 918 4 570 51 3 156 2142 PRKD2,STRN4,FKRP,MIR320E
SE_02_065700180 chr19:46713897-46717784 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 180 1 83 10 0 54 586 PRKD2,FKRP,MIR320E,STRN4
SE_02_135300942 chr19:46713945-46718401 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 942 1 92 12 0 47 576 PRKD2,FKRP,MIR320E,STRN4
SE_02_021101012 chr19:46714134-46740071 Sample_02_0211 Lung MRC-5_NFD_1DPT 1012 5 849 72 3 184 2528 PRKD2,STRN4,SLC1A5,FKRP,MIR320E
SE_02_033700413 chr19:46714508-46734872 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 413 3 681 59 3 148 2090 PRKD2,STRN4,FKRP,MIR320E
SE_02_125200417 chr19:46714559-46730060 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 417 7 499 49 2 132 1870 PRKD2,STRN4,FKRP,MIR320E
SE_02_025600621 chr19:46715321-46735022 Sample_02_0256 Peripheral blood MV411 621 3 670 56 3 139 2090 PRKD2,STRN4,FKRP,SLC1A5,MIR320E
SE_02_095000844 chr19:46715333-46739806 Sample_02_0950 Umbilical vein HUVEC_WT 844 10 817 66 3 170 2384 PRKD2,STRN4,MIR320E,SLC1A5,FKRP
SE_00_005500426 chr19:46715359-46739613 Sample_00_0055 Spleen spleen 34y 426 15 811 62 3 170 2384 PRKD2,STRN4,MIR320E,SLC1A5,FKRP,PTGIR,AP2S1,CALM3,DACT3
SE_02_106900368 chr19:46715391-46728762 Sample_02_1069 Bone marrow Bone marrow aspirate 368 2 438 42 2 125 1818 PRKD2,STRN4,FKRP,MIR320E
SE_02_104901604 chr19:46715449-46719575 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1604 1 104 10 1 46 478 PRKD2,STRN4,FKRP,MIR320E
SE_02_146900588 chr19:46715498-46733557 Sample_02_1469 Umbilical Vein HUVEC 588 5 595 50 3 136 2090 PRKD2,STRN4,FKRP,MIR320E
Genomic distribution of SEs associated with PRKD2
Genome Browser

The strength of the tissue affected by the gene

Expression of PRKD2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)