SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000117592
Gene: PRDX6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:173477330-173488815 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_030700145 chr1:173471845-173486517 Sample_02_0307 Neuroblastoma SJNB12 145 2 379 33 0 64 404 PRDX6
SE_02_075300279 chr1:173472605-173483829 Sample_02_0753 Embryo ES-derived progenitors_FG type 279 4 284 26 0 52 314 PRDX6,LOC100506023,LOC101928673
SE_02_127500340 chr1:173472624-173480336 Sample_02_1275 Prostate PC3_Vorinostat 340 5 206 21 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_075700392 chr1:173472626-173479992 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 392 3 197 21 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_017000518 chr1:173472854-173481024 Sample_02_0170 Prostate LNCaP_R1881_DOX 518 2 212 20 0 32 268 PRDX6
SE_02_075400705 chr1:173472857-173480196 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 705 3 192 19 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_016800570 chr1:173472864-173508542 Sample_02_0168 Prostate LNCaP 570 4 919 89 4 87 732 SLC9A11,PRDX6
SE_02_004900631 chr1:173472876-173478865 Sample_02_0049 Embryo endodermal CyT49_GTtoH 631 1 157 14 0 25 268 PRDX6
SE_02_032500469 chr1:173472992-173507253 Sample_02_0325 Liver hepatocytes_d1 469 6 894 85 4 85 732 SLC9A11,PRDX6
SE_02_003900791 chr1:173472996-173478744 Sample_02_0039 Embryo AFG 791 1 151 13 0 25 268 PRDX6
SE_02_004800806 chr1:173473073-173478690 Sample_02_0048 Embryo endodermal CyT49_HE 806 1 150 13 0 25 268 PRDX6
SE_02_150600518 chr1:173473206-173480012 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 518 3 181 18 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_051000109 chr1:173473259-173480221 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 109 2 184 18 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_117401125 chr1:173473289-173480029 Sample_02_1174 Brain GBM02 1125 5 179 18 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_140700639 chr1:173473309-173480405 Sample_02_1407 Prostate LNCaP_R1881 4h 639 2 186 18 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_01_010101538 chr1:173473516-173478937 Sample_01_0101 Pancreas pancreas_54y 1538 1 138 12 0 25 268 PRDX6,LOC100506023,LOC101928673
SE_02_081601620 chr1:173473606-173479916 Sample_02_0816 Ovary Clear cell ovarian cancer 1620 2 164 17 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_046500663 chr1:173473639-173509298 Sample_02_0465 Adipose subcutaneous adipocytes 663 21 911 89 4 88 732 PRDX6,LOC100506023,SLC9C2,LOC101928673
SE_02_050900238 chr1:173473658-173480348 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 238 2 174 17 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_064300849 chr1:173473699-173480275 Sample_02_0643 Mammary gland MDA-MB-436 849 2 172 17 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_051100471 chr1:173474306-173480174 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 471 2 154 16 0 28 268 PRDX6,LOC100506023,LOC101928673
SE_02_051400134 chr1:173474614-173480208 Sample_02_0514 Prostate LNCaP95_shARfl_DHT 134 2 149 15 0 28 268 PRDX6,LOC100506023,LOC101928673
Genomic distribution of SEs associated with PRDX6
Genome Browser

The strength of the tissue affected by the gene

Expression of PRDX6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)