SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000247774
Gene: PCED1B-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr12:47205898-47216456 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104300325 chr12:47141698-47334642 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 325 73 5340 456 13 197 1141 PCED1B,MIR4698,PCED1B-AS1,MIR4494
SE_02_103601149 chr12:47170363-47306483 Sample_02_1036 Mammary gland HCC70_XY018 1149 38 3782 341 10 157 1141 PCED1B,MIR4698,PCED1B-AS1
SE_02_104700959 chr12:47177707-47318242 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 959 41 3840 356 8 170 1141 PCED1B,MIR4698,PCED1B-AS1,MIR4494
SE_02_049200073 chr12:47182031-47309845 Sample_02_0492 Pharyng Detroit 562_LPS 73 32 3540 322 8 153 1141 PCED1B,MIR4698,PCED1B-AS1
SE_04_000700089 chr12:47182243-47228919 Sample_04_0007 Lung A549 FOXA2 shRNA2 89 13 1271 126 4 66 728 PCED1B,MIR4698,PCED1B-AS1
SE_02_103501034 chr12:47182344-47276594 Sample_02_1035 Mammary gland HCC70_Vehicle 1034 27 2618 264 6 124 1141 PCED1B,MIR4698,PCED1B-AS1
SE_02_130300727 chr12:47182833-47226127 Sample_02_1303 Lymphoma RL_tazemetostat 727 14 1156 122 4 65 728 PCED1B,MIR4698,PCED1B-AS1
SE_02_075100335 chr12:47183810-47224032 Sample_02_0751 Lymphoma Rec-1_WO 335 19 1078 115 4 60 728 PCED1B,MIR4698,PCED1B-AS1
SE_02_075000352 chr12:47183852-47226570 Sample_02_0750 Lymphoma Rec-1_GSI 352 18 1150 120 4 65 728 PCED1B,MIR4698,PCED1B-AS1
SE_02_076201442 chr12:47185157-47250591 Sample_02_0762 Podocyte podocyte_CTL 1442 12 1839 168 4 96 1141 PCED1B,MIR4698,PCED1B-AS1
SE_02_084100642 chr12:47187900-47223900 Sample_02_0841 Blood THP-1_untr 642 7 947 93 1 60 691 PCED1B,PCED1B-AS1,MIR4698
SE_04_001000087 chr12:47188304-47250681 Sample_04_0010 Lung A549 TGFb 87 15 1746 154 2 96 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_111900267 chr12:47189784-47281408 Sample_02_1119 Blood KBM7 267 35 2523 233 3 121 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_109900365 chr12:47190242-47250802 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 365 17 1699 143 2 92 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_045400450 chr12:47191470-47224456 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 450 5 870 68 0 56 671 PCED1B,PCED1B-AS1,MIR4698
SE_02_082600348 chr12:47191802-47247765 Sample_02_0826 Stomach gastric tumor 348 27 1557 113 1 92 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_101701147 chr12:47193371-47250919 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1147 9 1607 126 1 91 1084 PCED1B,PCED1B-AS1,MIR4698,AMIGO2
SE_02_111200968 chr12:47193399-47218676 Sample_02_1112 T lymphocyte THP-6 T-ALL 968 4 640 46 0 41 671 PCED1B,PCED1B-AS1,MIR4698
SE_02_078400736 chr12:47193446-47224101 Sample_02_0784 Blood OSU-CLL 736 8 798 64 0 55 671 PCED1B,PCED1B-AS1,MIR4698
SE_04_000100263 chr12:47193478-47293964 Sample_04_0001 Blood heat shocked K562 263 20 2773 242 3 143 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_122900482 chr12:47193811-47252558 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 482 29 1637 135 1 91 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_139300191 chr12:47193925-47223991 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 191 9 782 62 0 55 671 PCED1B,PCED1B-AS1,MIR4698
SE_02_081601545 chr12:47194398-47250401 Sample_02_0816 Ovary Clear cell ovarian cancer 1545 16 1558 122 1 90 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_152300057 chr12:47194495-47250614 Sample_02_1523 Lung A549 DMSO 57 13 1568 124 1 90 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_149200489 chr12:47195408-47224390 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 489 6 753 62 0 42 671 PCED1B,PCED1B-AS1,MIR4698
SE_02_077501175 chr12:47202941-47248225 Sample_02_0775 Pancreas EndoC-BH1_SE 1175 19 1288 95 1 70 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_103100200 chr12:47203029-47283503 Sample_02_1031 Head and neck SCC1 contol 200 23 2232 204 2 102 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_048000745 chr12:47205450-47250759 Sample_02_0480 Gingival epithelial HGEP 745 15 1294 105 1 67 1084 PCED1B,PCED1B-AS1,MIR4698
SE_02_061200590 chr12:47206374-47224811 Sample_02_0612 Liposarcoma DDLPS_T2 590 8 492 42 0 31 581 PCED1B,PCED1B-AS1,MIR4698
SE_02_122400371 chr12:47206437-47238645 Sample_02_1224 Bone marrow normal plasma cell 371 10 920 66 0 66 988 PCED1B,PCED1B-AS1,MIR4698
SE_02_081700344 chr12:47206774-47225396 Sample_02_0817 Ovary Epithelial ovarian cancer 344 5 500 40 0 31 529 PCED1B,PCED1B-AS1,MIR4698
SE_02_157301087 chr12:47206799-47224453 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1087 8 470 37 0 31 528 PCED1B,PCED1B-AS1,MIR4698
SE_02_049100087 chr12:47206878-47283103 Sample_02_0491 Pharyng Detroit 562-Control 87 17 2117 190 2 98 935 PCED1B,PCED1B-AS1,MIR4698
SE_02_088400209 chr12:47207038-47283026 Sample_02_0884 Colon LoVo 209 12 2113 190 2 96 915 PCED1B,PCED1B-AS1,MIR4698
SE_04_000900191 chr12:47207112-47250639 Sample_04_0009 Lung A549 191 12 1255 96 1 67 906 PCED1B,PCED1B-AS1,MIR4698
SE_04_000400046 chr12:47207121-47250472 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 46 12 1244 94 1 67 906 PCED1B,PCED1B-AS1,MIR4698
SE_02_047600696 chr12:47207126-47232042 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 696 10 722 49 0 37 492 PCED1B,PCED1B-AS1,MIR4698
SE_02_071700015 chr12:47207217-47281247 Sample_02_0717 Pancreas HPAFII_GFP_DOX 15 19 2067 185 2 96 892 PCED1B,PCED1B-AS1,MIR4698
SE_04_000600118 chr12:47207219-47250714 Sample_04_0006 Lung A549 GFP control 118 9 1256 97 1 67 892 PCED1B,PCED1B-AS1,MIR4698
SE_02_116900086 chr12:47207286-47281911 Sample_02_1169 Biliary H69_TGF beta_16h_2 86 13 2082 187 2 96 888 PCED1B,PCED1B-AS1,MIR4698
SE_02_064700925 chr12:47207314-47250706 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 925 13 1256 97 1 67 883 PCED1B,PCED1B-AS1,MIR4698
SE_04_000500042 chr12:47207320-47282528 Sample_04_0005 Lung A549 FOXA2 overexpressed 42 17 2097 189 2 96 883 PCED1B,PCED1B-AS1,MIR4698
SE_02_059200347 chr12:47207341-47223853 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 347 6 438 34 0 31 469 PCED1B,PCED1B-AS1,MIR4698
SE_02_153200718 chr12:47207496-47250786 Sample_02_1532 Mammary gland MCF10A 718 7 1254 97 1 67 852 PCED1B,PCED1B-AS1,MIR4698
SE_02_070500061 chr12:47207642-47280210 Sample_02_0705 Pancreas AsPC1 WT 61 15 2025 185 2 94 831 PCED1B,PCED1B-AS1,MIR4698
SE_02_071200073 chr12:47207668-47281051 Sample_02_0712 Pancreas BxPC3_sgNEG 73 16 2052 185 2 94 830 PCED1B,PCED1B-AS1,MIR4698
SE_02_116200517 chr12:47207822-47250723 Sample_02_1162 Stomach YCC11 517 15 1243 97 1 63 818 PCED1B,PCED1B-AS1,MIR4698
SE_04_000800129 chr12:47207927-47228198 Sample_04_0008 Lung A549 shRNA control 129 5 573 43 0 32 400 PCED1B,PCED1B-AS1,MIR4698
SE_02_056100099 chr12:47208090-47245789 Sample_02_0561 Lung A549_1 99 8 1084 71 1 62 801 PCED1B,PCED1B-AS1,MIR4698,AMIGO2
SE_02_153901053 chr12:47208471-47250626 Sample_02_1539 Nasopharyngeal C666-1 1053 16 1215 93 1 62 770 PCED1B,PCED1B-AS1,MIR4698
SE_04_000300050 chr12:47211122-47250481 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 50 10 1144 87 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_116600560 chr12:47211177-47250034 Sample_02_1166 Biliary H69_TGF beta_16h_1 560 10 1131 86 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_056200095 chr12:47211272-47239472 Sample_02_0562 Lung A549_Dex-treated 95 7 820 57 0 61 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_102500222 chr12:47211325-47282720 Sample_02_1025 Esophagus KYSE150 222 20 2001 181 2 91 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_064801326 chr12:47211986-47250845 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1326 15 1135 88 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_154100935 chr12:47212091-47250510 Sample_02_1541 Nasopharyngeal HNE1 935 12 1114 84 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_065201230 chr12:47212093-47250771 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1230 11 1127 87 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_094600437 chr12:47212152-47250840 Sample_02_0946 Tongue HN12 437 7 1127 87 1 62 498 PCED1B,PCED1B-AS1,MIR4698
SE_02_151500991 chr12:47212158-47250275 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 991 8 1104 84 1 62 498 PCED1B,PCED1B-AS1,MIR4698
Genomic distribution of SEs associated with PCED1B-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of PCED1B-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)