SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000099864
Gene: PALM Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:708935-748329 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_036200615 chr19:698584-728644 Sample_02_0362 Haematopoietic and lymphoid tissue REH 615 6 1087 84 1 65 636 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_087200226 chr19:701873-741689 Sample_02_0872 Colon HCT116_siCtrl-5FU 226 9 1481 109 1 76 1247 PALM,FSTL3,MISP,PRSS57,RNF126
SE_00_004300692 chr19:703131-754204 Sample_00_0043 Stomach stomach_96d 692 11 1932 142 2 111 2004 PALM,C19ORF21,RNF126,FSTL3,PRSSL1,PTBP1
SE_01_007900119 chr19:703170-757195 Sample_01_0079 Peyers patch Peyers-patch 119 7 2055 145 3 114 2119 PALM,C19ORF21,RNF126,FSTL3,PRSSL1,PTBP1
SE_02_153900873 chr19:703284-733721 Sample_02_1539 Nasopharyngeal C666-1 873 12 1100 90 1 66 757 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_029300223 chr19:703294-724623 Sample_02_0293 Pancreatic L3-6_4SC-202 223 4 718 59 1 54 212 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_098901303 chr19:703343-754161 Sample_02_0989 Kidney kidney cortex_WT 1303 17 1925 142 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_02_155400477 chr19:703459-754253 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 477 12 1927 142 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_00_005100559 chr19:703467-737396 Sample_00_0051 Adrenal gland adrenal gland 30y 559 18 1244 102 1 68 1118 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_027500360 chr19:703900-724015 Sample_02_0275 Retina FW14 360 4 672 57 1 54 212 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_120301076 chr19:704413-728273 Sample_02_1203 Brain NB1 1076 6 855 67 1 64 636 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_103200326 chr19:704952-753863 Sample_02_1032 Head and neck SCC1 JQ1 326 19 1862 136 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_02_103100087 chr19:706131-795069 Sample_02_1031 Head and neck SCC1 contol 87 30 3548 201 3 132 2979 PALM,MISP,LPPR3,RNF126,FSTL3,PRSS57,AZU1,PRTN3,MIR3187,MIR4745,PTBP1
SE_01_009200658 chr19:706954-734681 Sample_01_0092 Vagina vagina 658 5 1036 90 1 67 891 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_027700303 chr19:707648-724511 Sample_02_0277 Retina FW18 303 3 564 50 1 54 212 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_096200478 chr19:708032-722640 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 478 4 487 49 1 52 212 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_120501173 chr19:708039-723024 Sample_02_1205 Brain NB3 1173 7 498 49 1 53 212 PALM,FSTL3,MISP,PRSS57,RNF126
SE_00_002900290 chr19:708073-728211 Sample_00_0029 Ovary ovary 290 9 732 60 1 63 636 PALM,FSTL3,C19ORF21,PRSSL1,RNF126,CFD,ELANE,FGF22,ISP,PAL
SE_02_041300151 chr19:708103-721428 Sample_02_0413 Brain GBM_2493 151 2 441 47 1 52 212 PALM,FSTL3,C19ORF21,PRSSL1,RNF126
SE_02_093100580 chr19:708146-721331 Sample_02_0931 Embryo H9 UTXKO 580 2 435 46 1 52 212 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_096600797 chr19:708172-721512 Sample_02_0966 Brain H3.3K27M_JN29-BS3 797 3 435 46 1 52 212 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_121000540 chr19:708275-721530 Sample_02_1210 Brain GBM17 540 3 432 46 1 51 212 PALM,FSTL3,MISP,PRSS57,RNF126
SE_02_041500168 chr19:717660-754006 Sample_02_0415 Stomach YCC22 168 11 1424 98 1 64 1792 PALM,C19ORF21,FSTL3,PRSSL1,PTBP1
SE_02_104601856 chr19:718334-748792 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1856 10 1199 81 0 53 1664 PALM,FSTL3,MISP,PRSS57,PTBP1
SE_02_077501881 chr19:718654-722631 Sample_02_0775 Pancreas EndoC-BH1_SE 1881 1 115 12 0 6 0 PALM,FSTL3,MISP,PRSS57
SE_02_010600404 chr19:718686-757868 Sample_02_0106 Skin NHEK_M 404 6 1565 100 2 70 2097 PALM,C19ORF21,FSTL3,PRSSL1,PTBP1
SE_02_087400156 chr19:719179-754455 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 156 9 1401 95 1 64 1792 PALM,MISP,FSTL3,PRSS57,PTBP1
SE_02_136500353 chr19:722470-756270 Sample_02_1365 Pancreas AsPC1-untreated 353 10 1375 87 1 58 1792 PALM,MISP,FSTL3,PRSS57,MIR4745,PTBP1
SE_02_082600329 chr19:724407-802169 Sample_02_0826 Stomach gastric tumor 329 21 3226 161 2 119 3017 PALM,PTBP1,MISP,LPPR3,FSTL3,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_078000117 chr19:731023-803493 Sample_02_0780 Liver SMMC-7721 117 26 3012 141 2 108 2605 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_023700369 chr19:733247-757329 Sample_02_0237 Colon V389 369 8 977 56 2 48 1400 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_116600091 chr19:733521-802462 Sample_02_1166 Biliary H69_TGF beta_16h_1 91 23 2857 131 2 107 2472 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_088400579 chr19:734223-756932 Sample_02_0884 Colon LoVo 579 4 901 51 1 45 1241 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_02_116900085 chr19:734556-802658 Sample_02_1169 Biliary H69_TGF beta_16h_2 85 19 2806 123 2 106 2360 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_047700578 chr19:735393-756022 Sample_02_0477 Colon intestinal epithelial organoids_139a 578 5 824 44 1 43 1009 PALM,MISP,PTBP1,PRSS57,MIR4745,ARID3A
SE_02_047800643 chr19:735396-756044 Sample_02_0478 Colon normal colon mucosa 643 6 824 44 1 43 1009 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_02_032200475 chr19:735539-755818 Sample_02_0322 Colon Caco-2 475 2 815 44 1 43 1009 PALM,C19ORF21,PRSSL1,PTBP1
SE_00_003600141 chr19:736905-759035 Sample_00_0036 Small intestine small-intestine_108days 141 7 920 45 2 53 1436 PALM,C19ORF21,PRSSL1,PTBP1
SE_01_003700820 chr19:736921-755448 Sample_01_0037 Liver hepatocyte 820 2 758 43 1 43 886 PALM,C19ORF21,PRSSL1,PTBP1
SE_00_004900017 chr19:736974-756319 Sample_00_0049 Small intestine small intestine 30y 17 6 783 43 1 43 886 PALM,MISP,PTBP1,PRSS57,MIR4745,RNF126
SE_00_002000160 chr19:736981-756634 Sample_00_0020 Large intestine large-intestine_108d 160 5 791 43 1 43 886 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_024100217 chr19:737039-755746 Sample_02_0241 Colon V456 217 5 763 43 1 43 886 PALM,C19ORF21,PRSSL1,PTBP1
SE_01_009900488 chr19:737988-755937 Sample_01_0099 Colon transverse colon 488 6 729 42 1 43 886 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_00_003500391 chr19:738415-756353 Sample_00_0035 Sigmoid colon sigmoid-colon 391 7 718 41 1 43 886 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_023600209 chr19:738667-758675 Sample_02_0236 Colon V206 209 6 831 43 2 53 1382 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_067401132 chr19:740145-753775 Sample_02_0674 Endometrium E1_FA 1132 6 554 33 1 43 886 PALM,MISP,PRSS57,PTBP1
SE_02_035500376 chr19:741300-756081 Sample_02_0355 Colon HCT15 376 4 592 36 1 35 757 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_038000134 chr19:742484-802548 Sample_02_0380 Skeletal muscle RH18 134 7 2497 110 2 97 1982 PALM,PTBP1,C19ORF21,LPPR3,ELANE,PRSSL1,AZU1,PRTN3,MIR3187
SE_02_024200656 chr19:742497-756626 Sample_02_0242 Colon V481 656 2 568 34 1 35 757 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_002100389 chr19:743179-754750 Sample_02_0021 Colon V429 389 2 478 32 1 35 757 PALM,C19ORF21,PRSSL1,PTBP1
SE_02_127300210 chr19:744755-802843 Sample_02_1273 Cervix HeLa 210 16 2435 102 2 94 1982 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_035800568 chr19:746895-756420 Sample_02_0358 Colon LS180 568 1 379 21 1 15 556 PALM,C19ORF21,PTBP1
SE_02_137100728 chr19:747068-755390 Sample_02_1371 Pancreas Patu899S-untreated 728 3 346 21 1 14 518 PALM,MISP,PTBP1,MIR4745
SE_02_024000594 chr19:747613-755459 Sample_02_0240 Colon V429_2 594 3 320 18 1 13 359 PALM,C19ORF21,PTBP1
SE_02_077501163 chr19:747653-753009 Sample_02_0775 Pancreas EndoC-BH1_SE 1163 1 210 12 1 13 346 PALM,MISP,PTBP1
SE_02_125801049 chr19:748032-756485 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 1049 2 333 18 1 13 253 PALM,MISP,PTBP1,MIR4745
Genomic distribution of SEs associated with PALM
Genome Browser

The strength of the tissue affected by the gene

Expression of PALM

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)