SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000161270
Gene: NPHS1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:35825372-35869287 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003200846 chr19:35844903-35880142 Sample_02_0032 Pancreas pancreatic-islets-M 846 5 1042 78 2 328 4431 NPHS1,KIRREL2,APLP1,NFKBID,HCST,PRODH2,TYROBP
SE_02_004600130 chr19:35845520-35870048 Sample_02_0046 Embryo endodermal CyT49_ES_D10 130 6 728 50 1 233 3056 NPHS1,KIRREL2,APLP1,NFKBID,HCST,PRODH2,TYROBP
SE_01_010101543 chr19:35845586-35859812 Sample_01_0101 Pancreas pancreas_54y 1543 4 429 38 1 142 1549 KIRREL2,NPHS1,APLP1,PRODH2,LINC01529,NFKBID,TYROBP,HCST
SE_02_049400194 chr19:35845662-35862103 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 194 4 514 40 1 174 2013 KIRREL2,NPHS1,APLP1,PRODH2,LINC01529,NFKBID,TYROBP,HCST
SE_02_049500292 chr19:35845972-35861967 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 292 4 497 40 1 164 1890 KIRREL2,NPHS1,APLP1,PRODH2,LINC01529,NFKBID,TYROBP,HCST
SE_02_077500897 chr19:35847128-35857267 Sample_02_0775 Pancreas EndoC-BH1_SE 897 3 323 32 1 98 990 KIRREL2,NPHS1,APLP1,PRODH2,LINC01529,NFKBID,HCST
SE_02_123900404 chr19:35851455-35857892 Sample_02_1239 Skin Waga_virus_positive 404 1 209 27 0 69 389 KIRREL2,NPHS1,APLP1,PRODH2,NFKBID,HCST
Genomic distribution of SEs associated with NPHS1
Genome Browser

The strength of the tissue affected by the gene

Expression of NPHS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)