SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000196865
Gene: NHLRC2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:113854661-113917194 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062900578 chr10:113822499-113856491 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 578 12 876 34 3 100 793 NHLRC2,DCLRE1A,MIR4483
SE_02_143200796 chr10:113835667-113866935 Sample_02_1432 Bone A673 STAG2 WT 796 7 801 27 2 100 743 NHLRC2,DCLRE1A
SE_02_017600063 chr10:113841034-113904069 Sample_02_0176 Peripheral blood LOUCY 63 5 1638 55 5 166 976 DCLRE1A,NHLRC2
SE_02_106100032 chr10:113841476-113923209 Sample_02_1061 Bone TC71_WT 32 23 2125 69 8 218 1654 NHLRC2,DCLRE1A
SE_02_148800032 chr10:113841476-113923209 Sample_02_1488 Bone TC-71 32 23 2125 69 8 218 1654 NHLRC2,DCLRE1A
SE_02_105900206 chr10:113841537-113867647 Sample_02_1059 Bone A673_WT 206 3 654 24 2 83 691 NHLRC2,DCLRE1A
SE_02_147300208 chr10:113841537-113867647 Sample_02_1473 Bone A-673 208 3 654 24 2 83 691 NHLRC2,DCLRE1A
SE_02_148200077 chr10:113841638-113867314 Sample_02_1482 Bone POE 77 5 640 24 2 83 685 NHLRC2,DCLRE1A
SE_02_058000858 chr10:113842199-113859452 Sample_02_0580 Blood HEL_sgSIK3e4 858 10 409 16 1 81 677 NHLRC2,DCLRE1A
SE_02_142900364 chr10:113842273-113892061 Sample_02_1429 Blood GM12878_WT 364 14 1289 43 4 119 782 NHLRC2,DCLRE1A
SE_02_057600798 chr10:113842364-113859470 Sample_02_0576 Blood HEL_sgLKB1e2 798 10 408 16 1 76 669 NHLRC2,DCLRE1A
SE_02_147600064 chr10:113842967-113922397 Sample_02_1476 Bone EW-1 64 18 2083 65 7 201 1603 NHLRC2,DCLRE1A
SE_02_083500985 chr10:113843090-113857293 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 985 4 344 12 0 64 615 NHLRC2,DCLRE1A
SE_02_057900931 chr10:113843099-113858725 Sample_02_0579 Blood HEL_sgNeg2 931 6 382 14 1 66 634 NHLRC2,DCLRE1A
SE_02_028400253 chr10:113843248-113923672 Sample_02_0284 Pelvis patient 119 253 12 2111 66 8 202 1603 DCLRE1A,NHLRC2
SE_02_147900058 chr10:113843328-113898620 Sample_02_1479 Bone EW-7 58 12 1444 45 4 128 789 NHLRC2,DCLRE1A
SE_02_106000129 chr10:113843343-113866295 Sample_02_1060 Bone TC71_SA2 KO 129 4 594 21 2 71 645 NHLRC2,DCLRE1A
SE_02_148501138 chr10:113843347-113866613 Sample_02_1485 Bone SK-ES-1 1138 7 598 21 2 71 645 NHLRC2,DCLRE1A
SE_01_001700271 chr10:113843443-113857431 Sample_01_0017 Muscle A673 271 3 342 12 0 65 615 DCLRE1A,NHLRC2
SE_02_083400768 chr10:113843530-113881078 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 768 9 987 31 2 101 726 NHLRC2,DCLRE1A
SE_02_083700749 chr10:113843537-113880583 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 749 9 975 31 2 98 726 NHLRC2,DCLRE1A
SE_02_128000749 chr10:113843545-113867311 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 749 8 612 20 2 71 645 NHLRC2,DCLRE1A
SE_02_083600762 chr10:113843606-113860070 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 762 4 398 14 1 70 645 NHLRC2,DCLRE1A
SE_02_083300915 chr10:113843607-113866101 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 915 4 585 20 2 71 645 NHLRC2,DCLRE1A
SE_02_071901069 chr10:113843702-113857057 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 1069 4 327 11 0 64 615 NHLRC2,DCLRE1A
SE_02_105800258 chr10:113843763-113858468 Sample_02_1058 Bone A673_SA2 Rescue 258 3 363 13 0 65 621 NHLRC2,DCLRE1A
SE_02_148300972 chr10:113843995-113858408 Sample_02_1483 Bone RD-ES 972 8 357 13 0 65 612 NHLRC2,DCLRE1A
SE_02_146001019 chr10:113843996-113864836 Sample_02_1460 Blood Mutz-3 1019 4 531 20 2 70 640 NHLRC2,DCLRE1A
SE_02_143301034 chr10:113844125-113856989 Sample_02_1433 Bone A673 STAG2 null 1034 8 316 11 0 62 599 NHLRC2,DCLRE1A
SE_02_148000300 chr10:113844138-113867808 Sample_02_1480 Bone MHH-ES-1 300 6 619 20 2 70 628 NHLRC2,DCLRE1A
SE_02_070200035 chr10:113844482-113875525 Sample_02_0702 Bone David_TC71 35 10 807 25 2 68 606 NHLRC2,DCLRE1A
SE_02_084200275 chr10:113844574-113856867 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 275 3 300 11 0 58 576 NHLRC2,DCLRE1A
SE_02_107400041 chr10:113850728-113922913 Sample_02_1074 Lymphoma BC-1 41 17 1906 60 7 183 1381 NHLRC2,DCLRE1A
SE_02_078400687 chr10:113850865-113881242 Sample_02_0784 Blood OSU-CLL 687 9 808 26 2 82 503 NHLRC2,DCLRE1A
SE_02_107500051 chr10:113851080-113922259 Sample_02_1075 Lymphoma BC-3 51 25 1883 59 6 182 1380 NHLRC2,DCLRE1A
SE_02_116300131 chr10:113851344-113857028 Sample_02_1163 Embryonic kidney HEK293 no dox 131 2 132 6 0 44 392 NHLRC2,DCLRE1A
SE_02_086200454 chr10:113852983-113860624 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 454 2 181 9 2 43 380 NHLRC2,DCLRE1A
SE_02_090401606 chr10:113853416-113868184 Sample_02_0904 Heart left ventricle_DCM_LV1028 1606 4 398 13 2 37 350 NHLRC2,DCLRE1A
SE_02_111400268 chr10:113853782-113856715 Sample_02_1114 Embryonic kidney HEK293 268 1 76 3 0 28 293 NHLRC2,DCLRE1A
SE_02_105900557 chr10:113890017-113961238 Sample_02_1059 Bone A673_WT 557 28 1939 48 10 178 849 NHLRC2,DCLRE1A
SE_02_147300562 chr10:113890017-113961238 Sample_02_1473 Bone A-673 562 28 1939 48 10 178 849 NHLRC2,DCLRE1A
SE_02_086200561 chr10:113890855-113910759 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 561 11 523 18 2 66 362 NHLRC2,DCLRE1A
Genomic distribution of SEs associated with NHLRC2
Genome Browser

The strength of the tissue affected by the gene

Expression of NHLRC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)