SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000119638
Gene: NEK9 Gene type: protein_coding
Strand: - External links:
Genomic region: chr14:75079353-75127344 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_148100377 chr14:75111554-75174624 Sample_02_1481 Bone MIC 377 25 1477 146 1 167 1025 TMED10,NEK9,ZC2HC1C,ACYP1
SE_02_137500882 chr14:75119017-75166414 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 882 11 1110 124 1 146 869 TMED10,NEK9,ZC2HC1C,ACYP1
SE_02_152901014 chr14:75119985-75147479 Sample_02_1529 Peripheral blood neutrophils_0BC75 1014 6 606 69 0 102 735 TMED10,NEK9
SE_02_143100286 chr14:75120117-75198936 Sample_02_1431 Blood T cell 286 17 1868 185 1 237 990 TMED10,NEK9
SE_01_010401032 chr14:75120262-75151133 Sample_01_0104 Lung upper lobe of left lung 1032 12 696 83 0 109 819 TMED10,NEK9
SE_02_146000379 chr14:75120462-75150154 Sample_02_1460 Blood Mutz-3 379 11 666 80 0 108 795 TMED10,NEK9
SE_02_081800819 chr14:75120699-75148970 Sample_02_0818 Ovary High-grade serous ovarian cancer 819 12 625 73 0 98 781 TMED10,NEK9
SE_02_123000888 chr14:75120748-75132881 Sample_02_1230 Lung PC9 888 5 274 32 0 44 406 TMED10,NEK9
SE_02_133000275 chr14:75121523-75191751 Sample_02_1330 Blood AMU-AML1 275 24 1659 166 1 193 913 TMED10,NEK9
SE_02_149201174 chr14:75122774-75157035 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1174 12 782 85 0 91 777 TMED10,NEK9
SE_02_087500497 chr14:75122780-75206964 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 497 25 2011 207 3 240 913 TMED10,NEK9
SE_01_007600635 chr14:75123310-75177784 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 635 9 1257 126 1 161 913 NEK9,TMED10
SE_02_024200076 chr14:75123422-75208021 Sample_02_0242 Colon V481 76 12 2018 203 3 240 913 NEK9,TMED10
SE_02_023400950 chr14:75123436-75177629 Sample_02_0234 Tonsil Th17 950 14 1251 124 1 161 913 NEK9,TMED10
SE_01_006900400 chr14:75123597-75189795 Sample_01_0069 Adrenal gland adrenal-gland 400 10 1546 146 1 193 913 NEK9,TMED10
SE_02_059400690 chr14:75123608-75174968 Sample_02_0594 iPSC-derived neural progenitors 690 14 1196 122 1 129 777 TMED10,NEK9
SE_02_066000246 chr14:75123630-75184991 Sample_02_0660 Mammary gland MCF10DCIS 246 23 1417 136 1 180 913 TMED10,NEK9
SE_02_152200391 chr14:75123650-75185770 Sample_02_1522 Skin A375 RTKi 391 15 1440 137 1 180 913 TMED10,NEK9
SE_02_044801008 chr14:75123735-75132861 Sample_02_0448 Bone MNNG 1008 2 201 20 0 35 369 TMED10,NEK9
SE_02_141000262 chr14:75123738-75177302 Sample_02_1410 Brain GSC6 262 17 1237 122 1 159 913 TMED10,NEK9
SE_02_098901354 chr14:75123775-75166680 Sample_02_0989 Kidney kidney cortex_WT 1354 24 998 108 1 125 777 TMED10,NEK9
SE_01_009700666 chr14:75123807-75177556 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 666 12 1236 122 1 160 913 TMED10,NEK9
SE_02_125800490 chr14:75123818-75178133 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 490 12 1247 123 1 161 913 TMED10,NEK9
SE_02_118500099 chr14:75123844-75189660 Sample_02_1185 Brain GBM14 99 24 1533 144 1 192 913 TMED10,NEK9
SE_02_057500350 chr14:75123861-75205695 Sample_02_0575 Blood MOLM13_sgLKB1e2 350 25 1938 201 3 236 913 TMED10,NEK9
SE_02_046600960 chr14:75123863-75166573 Sample_02_0466 Adipose visceral adipocytes 960 20 994 108 1 125 777 TMED10,NEK9
SE_02_085700332 chr14:75123887-75174810 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 332 13 1182 119 1 128 772 TMED10,NEK9
SE_02_098100037 chr14:75123908-75177370 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 37 20 1232 122 1 159 906 TMED10,NEK9
SE_02_066900192 chr14:75123944-75178801 Sample_02_0669 Prostate prostate cancer_DSG 192 11 1255 123 1 164 906 TMED10,NEK9
SE_02_116200376 chr14:75123957-75209012 Sample_02_1162 Stomach YCC11 376 28 2035 201 3 239 906 TMED10,NEK9
SE_02_117400641 chr14:75123968-75151484 Sample_02_1174 Brain GBM02 641 14 613 70 0 89 735 TMED10,NEK9
SE_02_137400859 chr14:75124010-75173807 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 859 13 1160 119 1 126 768 TMED10,NEK9
SE_01_007200426 chr14:75124100-75184008 Sample_01_0072 Breast epithelium breast-epithelium 426 9 1376 133 1 172 897 NEK9,TMED10
SE_02_134100160 chr14:75124137-75190039 Sample_02_1341 Blood MV411 160 32 1531 146 1 190 895 TMED10,NEK9
SE_02_057400268 chr14:75124172-75189709 Sample_02_0574 Blood MOLM-13_sgNeg2 268 21 1522 141 1 190 892 TMED10,NEK9
SE_02_080000023 chr14:75124219-75177258 Sample_02_0800 Brain 3679 23 19 1216 119 1 153 888 TMED10,NEK9
SE_02_081600794 chr14:75124221-75149762 Sample_02_0816 Ovary Clear cell ovarian cancer 794 12 544 58 0 82 716 TMED10,NEK9
SE_02_117700083 chr14:75124224-75177266 Sample_02_1177 Brain GBM05 83 20 1215 119 1 153 886 TMED10,NEK9
SE_02_097300028 chr14:75124228-75177414 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 28 23 1218 119 1 154 886 TMED10,NEK9
SE_02_119100204 chr14:75124242-75189537 Sample_02_1191 Brain GBM25 204 24 1512 139 1 186 886 TMED10,NEK9
SE_02_149300136 chr14:75124244-75184643 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 136 22 1378 132 1 172 885 TMED10,NEK9
SE_02_066100500 chr14:75124303-75151645 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 500 11 600 67 0 83 705 TMED10,NEK9
SE_02_136600765 chr14:75124305-75132978 Sample_02_1366 Pancreas BxPC3-untreated 765 2 180 18 0 29 343 TMED10,NEK9
SE_02_053000102 chr14:75124339-75183576 Sample_02_0530 Mammary gland MCF10A 102 34 1357 131 1 168 874 TMED10,NEK9
SE_02_119300168 chr14:75124350-75177273 Sample_02_1193 Brain GBM27 168 21 1213 119 1 153 872 TMED10,NEK9
SE_02_118600976 chr14:75124840-75151575 Sample_02_1186 Brain GBM15 976 8 593 65 0 83 697 TMED10,NEK9
Genomic distribution of SEs associated with NEK9
Genome Browser

The strength of the tissue affected by the gene

Expression of NEK9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)