SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: NCK1-AS1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_141000215 chr3:136785418-136852403 Sample_02_1410 Brain GSC6 215 9 1633 167 0 86 217 SLC35G2,NCK1-AS1,NCK1,STAG1
SE_02_147800140 chr3:136818273-136860152 Sample_02_1478 Bone EW-3 140 12 977 114 0 89 362 SLC35G2,NCK1-AS1,NCK1
SE_02_149200516 chr3:136821191-136866338 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 516 17 1067 124 0 104 256 NCK1,SLC35G2,NCK1-AS1
SE_02_148200570 chr3:136830778-136858807 Sample_02_1482 Bone POE 570 11 629 73 0 87 145 SLC35G2,NCK1-AS1,NCK1
SE_02_106100775 chr3:136830869-136851813 Sample_02_1061 Bone TC71_WT 775 6 478 55 0 33 0 SLC35G2,NCK1-AS1,NCK1
SE_02_148800770 chr3:136830869-136851813 Sample_02_1488 Bone TC-71 770 6 478 55 0 33 0 SLC35G2,NCK1-AS1,NCK1
SE_02_147500831 chr3:136832977-136843098 Sample_02_1475 Bone CHLA-25 831 1 192 18 0 30 0 SLC35G2,NCK1-AS1,NCK1
SE_02_128000704 chr3:136833295-136859647 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 704 7 572 66 0 85 145 SLC35G2,NCK1-AS1,NCK1
SE_02_143100486 chr3:136834326-136955380 Sample_02_1431 Blood T cell 486 23 2922 290 1 211 498 NCK1,SLC35G2,NCK1-AS1,IL20RB
SE_02_103601501 chr3:136837876-136869384 Sample_02_1036 Mammary gland HCC70_XY018 1501 18 754 90 0 82 256 NCK1,SLC35G2,NCK1-AS1
SE_02_104701233 chr3:136843508-136927790 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1233 25 2126 209 1 81 256 NCK1,SLC35G2,NCK1-AS1,IL20RB
SE_02_078100439 chr3:136856792-136955257 Sample_02_0781 Lymphoma Pfeiffer_DMSO 439 44 2421 231 1 126 353 NCK1,NCK1-AS1,IL20RB,SLC35G2
SE_02_104301220 chr3:136858977-136955202 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1220 30 2379 226 1 126 353 NCK1,NCK1-AS1,IL20RB,SLC35G2
SE_02_130200404 chr3:136859848-136951100 Sample_02_1302 Lymphoma RL DMSO 404 38 2274 219 1 118 353 NCK1,NCK1-AS1,IL20RB,SLC35G2
Genomic distribution of SEs associated with NCK1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of NCK1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)