SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000271447
Gene: MMP28 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:35756249-35795707 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_088601702 chr17:35747732-35789682 Sample_02_0886 Skin foreskin_ p63KLF4 1702 7 1119 118 0 198 1934 C17ORF50,MMP28,GAS2L2,TAF15,RASL10B
SE_02_031200485 chr17:35763502-35818280 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 485 7 1465 129 2 229 1808 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_03_001300736 chr17:35763515-35811738 Sample_03_0013 Lung A549 736 7 1285 106 1 226 1790 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_03_000700380 chr17:35763543-35810977 Sample_03_0007 Lung A549_dexamethasone_12h 380 6 1262 106 1 226 1749 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_03_001500527 chr17:35763554-35811333 Sample_03_0015 Lung A549_dexamethasone_8h 527 7 1272 106 1 226 1772 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_03_000800619 chr17:35763562-35811776 Sample_03_0008 Lung A549_dexamethasone_7h 619 6 1285 106 1 226 1790 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_02_029900123 chr17:35763586-35816083 Sample_02_0299 Neuroblastoma CLB-MA 123 8 1402 123 1 226 1790 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_02_031500485 chr17:35763593-35802524 Sample_02_0315 Neuroblastoma TR14 485 4 1014 81 0 187 1456 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_01_007400387 chr17:35763659-35823545 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 387 10 1597 138 3 247 1906 TAF15,MMP28,C17ORF50,RASL10B,GAS2L2,C17ORF66
SE_01_008800299 chr17:35763677-35805710 Sample_01_0088 Tibial nerve tibial-nerve 299 6 1107 92 0 187 1456 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_01_007700427 chr17:35763697-35823715 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 427 11 1605 141 3 247 1906 TAF15,MMP28,C17ORF50,RASL10B,GAS2L2,C17ORF66
SE_01_008300354 chr17:35763726-35823516 Sample_01_0083 Sigmoid colon sigmoid-colon 354 9 1595 138 3 247 1906 TAF15,MMP28,C17ORF50,RASL10B,GAS2L2,C17ORF66
SE_02_022000140 chr17:35763751-35802369 Sample_02_0220 Brain BE2C_1 140 9 1010 81 0 187 1456 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_02_033900152 chr17:35763809-35802350 Sample_02_0339 Neuroblastoma NGP 152 9 1008 81 0 187 1455 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_02_039601713 chr17:35763918-35802133 Sample_02_0396 Skin NHEK-D 1713 11 997 81 0 185 1448 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_02_046501376 chr17:35763942-35804596 Sample_02_0465 Adipose subcutaneous adipocytes 1376 15 1064 87 0 187 1447 C17ORF50,MMP28,TAF15,GAS2L2,RASL10B
SE_02_110500702 chr17:35763949-35805790 Sample_02_1105 Brain NBL-S 702 20 1102 91 0 187 1444 C17ORF50,MMP28,TAF15,GAS2L2,RASL10B
SE_02_030500320 chr17:35763951-35811739 Sample_02_0305 Neuroblastoma SH-EP 320 6 1276 105 1 226 1778 TAF15,MMP28,C17ORF50,GAS2L2,RASL10B
SE_00_002200827 chr17:35764183-35802308 Sample_00_0022 Lung lung_30y 827 11 993 78 0 187 1387 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_02_005600697 chr17:35764970-35802128 Sample_02_0056 Mammary gland HMEC 697 10 963 77 0 164 1200 MMP28,C17ORF50,GAS2L2,RASL10B,TAF15
SE_01_006100356 chr17:35772995-35802385 Sample_01_0061 Prostate RWPE1 356 11 767 62 0 124 512 MMP28,GAS2L2,RASL10B,C17ORF50,TAF15
SE_02_002100743 chr17:35773125-35804856 Sample_02_0021 Colon V429 743 5 830 69 0 124 488 MMP28,GAS2L2,RASL10B,C17ORF50,TAF15
SE_02_005700247 chr17:35776940-35811531 Sample_02_0057 Mammary gland vHMEC 247 10 919 77 1 131 702 TAF15,MMP28,GAS2L2,RASL10B,C17ORF50
SE_01_004500859 chr17:35776989-35789974 Sample_01_0045 Mammary gland mammary-epithelial-cell 859 3 315 24 0 45 179 MMP28,GAS2L2,RASL10B,C17ORF50,TAF15
SE_02_060000530 chr17:35777054-35800724 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 530 8 595 48 0 73 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_059600601 chr17:35777076-35800854 Sample_02_0596 Mammary gland MCF10A_ DMSO 601 7 596 48 0 73 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_135800357 chr17:35777083-35800405 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 357 8 582 48 0 73 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_060200682 chr17:35777092-35800639 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 682 8 590 48 0 73 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_135900392 chr17:35777113-35800467 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 392 9 584 48 0 72 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_072500535 chr17:35777142-35793403 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 535 12 401 34 0 58 179 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_060300752 chr17:35777207-35800423 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 752 9 579 47 0 72 379 MMP28,C17ORF50,TAF15,GAS2L2,RASL10B
SE_02_029400474 chr17:35782729-35820486 Sample_02_0294 Pancreatic L3-6_DMSO 474 7 1024 96 3 133 594 TAF15,MMP28,GAS2L2,C17ORF50,C17ORF66
SE_01_001200468 chr17:35782885-35811817 Sample_01_0012 Lung A549_dexamethasone_1h 468 4 783 69 1 122 534 TAF15,MMP28,GAS2L2,C17ORF50
SE_02_006300796 chr17:35782985-35811565 Sample_02_0063 Skin Keratinocytes 796 4 771 69 1 122 524 TAF15,MMP28,GAS2L2,C17ORF50
SE_02_017000511 chr17:35783014-35824827 Sample_02_0170 Prostate LNCaP_R1881_DOX 511 7 1128 106 3 153 690 TAF15,MMP28,GAS2L2,C17ORF50,C17ORF66
SE_01_004100649 chr17:35784126-35793817 Sample_01_0041 Skin keratinocyte 649 2 230 24 0 41 0 MMP28,GAS2L2,C17ORF50,TAF15
SE_02_000600193 chr17:35788706-35797211 Sample_02_0006 Cervical cervical-cancer_parental 193 3 213 18 0 26 200 MMP28,GAS2L2,C17ORF50,TAF15
SE_02_110500748 chr17_KI270857v1_alt:0-44805 Sample_02_1105 Brain NBL-S 748 26 0 0 0 0 0 TAF15,MMP28
SE_02_072500412 chr17_KI270857v1_alt:10396-30500 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 412 14 0 0 0 0 0 MMP28
SE_02_060200556 chr17_KI270857v1_alt:11477-44998 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 556 7 0 0 0 0 0 TAF15,MMP28
SE_02_153200634 chr17_KI270857v1_alt:11501-45762 Sample_02_1532 Mammary gland MCF10A 634 6 0 0 0 0 0 TAF15,MMP28
SE_02_060000544 chr17_KI270857v1_alt:11539-44420 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 544 11 0 0 0 0 0 TAF15,MMP28
SE_02_135800346 chr17_KI270857v1_alt:11544-30676 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 346 7 0 0 0 0 0 MMP28
SE_02_060300664 chr17_KI270857v1_alt:11544-44834 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 664 12 0 0 0 0 0 TAF15,MMP28
SE_02_135700516 chr17_KI270857v1_alt:11687-30600 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 516 16 0 0 0 0 0 MMP28
SE_02_059600526 chr17_KI270857v1_alt:11759-45094 Sample_02_0596 Mammary gland MCF10A_ DMSO 526 8 0 0 0 0 0 TAF15,MMP28
SE_02_135900422 chr17_KI270857v1_alt:11775-30722 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 422 11 0 0 0 0 0 MMP28
SE_02_151600970 chr17_KI270857v1_alt:11793-35094 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 970 8 0 0 0 0 0 MMP28
SE_02_153900963 chr17_KI270857v1_alt:17314-45119 Sample_02_1539 Nasopharyngeal C666-1 963 12 0 0 0 0 0 TAF15,MMP28
SE_02_105401016 chr17_KI270857v1_alt:17520-45080 Sample_02_1054 Esophagus SKGT4 1016 8 0 0 0 0 0 TAF15,MMP28
SE_02_130500432 chr17_KI270857v1_alt:17589-45241 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 432 13 0 0 0 0 0 TAF15,MMP28
SE_02_113100798 chr17_KI270857v1_alt:17670-45294 Sample_02_1131 Pancreas T3M4 wt 798 15 0 0 0 0 0 TAF15,MMP28
SE_02_103602552 chr17_KI270857v1_alt:4666-44495 Sample_02_1036 Mammary gland HCC70_XY018 2552 7 0 0 0 0 0 TAF15,MMP28
SE_02_046501307 chr17_KI270857v1_alt:7713-45085 Sample_02_0465 Adipose subcutaneous adipocytes 1307 17 0 0 0 0 0 TAF15,MMP28
SE_02_151300919 chr17_KI270857v1_alt:8041-44450 Sample_02_1513 Lung Transitional AT2->1 cells 919 8 0 0 0 0 0 TAF15,MMP28
Genomic distribution of SEs associated with MMP28
Genome Browser

The strength of the tissue affected by the gene

Expression of MMP28

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)