SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000099812
Gene: MISP Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:751112-764318 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098901303 chr19:703343-754161 Sample_02_0989 Kidney kidney cortex_WT 1303 17 1925 142 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_02_155400477 chr19:703459-754253 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 477 12 1927 142 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_02_103200326 chr19:704952-753863 Sample_02_1032 Head and neck SCC1 JQ1 326 19 1862 136 2 111 2004 PALM,MISP,RNF126,FSTL3,PRSS57,PTBP1
SE_02_103100087 chr19:706131-795069 Sample_02_1031 Head and neck SCC1 contol 87 30 3548 201 3 132 2979 PALM,MISP,LPPR3,RNF126,FSTL3,PRSS57,AZU1,PRTN3,MIR3187,MIR4745,PTBP1
SE_02_087400156 chr19:719179-754455 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 156 9 1401 95 1 64 1792 PALM,MISP,FSTL3,PRSS57,PTBP1
SE_02_136500353 chr19:722470-756270 Sample_02_1365 Pancreas AsPC1-untreated 353 10 1375 87 1 58 1792 PALM,MISP,FSTL3,PRSS57,MIR4745,PTBP1
SE_02_082600329 chr19:724407-802169 Sample_02_0826 Stomach gastric tumor 329 21 3226 161 2 119 3017 PALM,PTBP1,MISP,LPPR3,FSTL3,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_078000117 chr19:731023-803493 Sample_02_0780 Liver SMMC-7721 117 26 3012 141 2 108 2605 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_116600091 chr19:733521-802462 Sample_02_1166 Biliary H69_TGF beta_16h_1 91 23 2857 131 2 107 2472 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_088400579 chr19:734223-756932 Sample_02_0884 Colon LoVo 579 4 901 51 1 45 1241 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_02_116900085 chr19:734556-802658 Sample_02_1169 Biliary H69_TGF beta_16h_2 85 19 2806 123 2 106 2360 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_047700578 chr19:735393-756022 Sample_02_0477 Colon intestinal epithelial organoids_139a 578 5 824 44 1 43 1009 PALM,MISP,PTBP1,PRSS57,MIR4745,ARID3A
SE_02_047800643 chr19:735396-756044 Sample_02_0478 Colon normal colon mucosa 643 6 824 44 1 43 1009 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_00_004900017 chr19:736974-756319 Sample_00_0049 Small intestine small intestine 30y 17 6 783 43 1 43 886 PALM,MISP,PTBP1,PRSS57,MIR4745,RNF126
SE_01_009900488 chr19:737988-755937 Sample_01_0099 Colon transverse colon 488 6 729 42 1 43 886 PALM,MISP,PTBP1,PRSS57,MIR4745
SE_02_067401132 chr19:740145-753775 Sample_02_0674 Endometrium E1_FA 1132 6 554 33 1 43 886 PALM,MISP,PRSS57,PTBP1
SE_02_127300210 chr19:744755-802843 Sample_02_1273 Cervix HeLa 210 16 2435 102 2 94 1982 PALM,PTBP1,MISP,LPPR3,ELANE,PRSS57,AZU1,PRTN3,MIR3187,MIR4745
SE_02_137100728 chr19:747068-755390 Sample_02_1371 Pancreas Patu899S-untreated 728 3 346 21 1 14 518 PALM,MISP,PTBP1,MIR4745
SE_02_077501163 chr19:747653-753009 Sample_02_0775 Pancreas EndoC-BH1_SE 1163 1 210 12 1 13 346 PALM,MISP,PTBP1
SE_02_125801049 chr19:748032-756485 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 1049 2 333 18 1 13 253 PALM,MISP,PTBP1,MIR4745
SE_04_000900157 chr19:749532-801684 Sample_04_0009 Lung A549 157 10 2159 90 2 73 1353 PTBP1,MISP,LPPR3,PALM,AZU1,PRTN3,MIR3187,MIR4745,BSG,POLRMT
SE_04_001000761 chr19:749914-755468 Sample_04_0010 Lung A549 TGFb 761 1 221 13 1 11 128 MISP,PALM,PTBP1,MIR4745,BSG,POLRMT
SE_02_105400720 chr19:750476-755485 Sample_02_1054 Esophagus SKGT4 720 2 202 9 1 11 128 MISP,PALM,PTBP1,MIR4745
SE_02_151301024 chr19:750499-754366 Sample_02_1513 Lung Transitional AT2->1 cells 1024 1 145 7 1 11 128 MISP,PALM,PTBP1
SE_02_081100650 chr19:750530-801454 Sample_02_0811 Thyroid BCPAP 650 12 2107 84 2 73 1353 PTBP1,MISP,LPPR3,PALM,AZU1,PRTN3,MIR3187,MIR4745
SE_02_138400240 chr19:755018-802662 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 240 8 1984 77 1 62 1225 PTBP1,MISP,LPPR3,PALM,ELANE,AZU1,PRTN3,MIR3187,MIR4745
SE_02_138500081 chr19:757432-811318 Sample_02_1385 Other iPSCs 81 17 2349 91 0 113 2180 MIR4745,PTBP1,MISP,CFD,PALM,ELANE,AZU1,PRTN3,LPPR3,MIR3187
SE_02_104601848 chr19:764229-800776 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1848 8 1523 66 0 51 312 PTBP1,MISP,LPPR3,AZU1,PRTN3,MIR3187,MIR4745
Genomic distribution of SEs associated with MISP
Genome Browser

The strength of the tissue affected by the gene

Expression of MISP

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)