SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000265874
Gene: MIR4489 Gene type: miRNA
Strand: + External links:
Genomic region: chr11:65649192-65649253 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_146900443 chr11:65636428-65655203 Sample_02_1469 Umbilical Vein HUVEC 443 3 495 37 3 255 2555 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_01_010400482 chr11:65636764-65654912 Sample_01_0104 Lung upper lobe of left lung 482 2 472 36 3 242 2378 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11,LTBP3,CTSW,CFL1,RNASEH2C
SE_02_090600864 chr11:65636920-65654490 Sample_02_0906 Heart left ventricle_DCM_LV1072 864 2 459 36 3 217 2222 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_02_118500865 chr11:65637142-65654911 Sample_02_1185 Brain GBM14 865 3 465 36 3 237 2299 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_02_078300728 chr11:65637254-65653843 Sample_02_0783 Blood MEC2 728 2 433 34 3 209 2020 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_02_088801278 chr11:65637295-65656103 Sample_02_0888 Heart left ventricle_LV1160 1278 3 500 38 3 241 2466 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_00_004700316 chr11:65637397-65654085 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 316 2 435 36 3 209 2035 SIPA1,MIR4489,PCNXL3,RELA,MIR4690,KCNK7,MAP3K11
SE_02_139300703 chr11:65637449-65660921 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 703 4 631 47 4 262 2787 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_00_005500237 chr11:65637469-65654234 Sample_00_0055 Spleen spleen 34y 237 4 439 36 3 208 2050 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3,EHBP1L1,LTBP3,KAT5,EIF1AD,CTSW,CFL1,SSSCA1,SCYL1,FRMD8,RNASEH2C,AP5B1,FAM89B
SE_01_010701173 chr11:65637535-65660663 Sample_01_0107 Esophagus esophagus squamous epithelium 1173 5 622 44 4 262 2774 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3,EHBP1L1,CFL1,SSSCA1,FAM89B
SE_02_059100294 chr11:65637556-65654060 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 294 3 429 35 3 207 2001 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_081600912 chr11:65637562-65654465 Sample_02_0816 Ovary Clear cell ovarian cancer 912 2 447 35 3 210 2082 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_078200822 chr11:65637566-65653976 Sample_02_0782 Blood MEC1 822 3 427 34 3 207 1988 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_090001226 chr11:65637590-65654379 Sample_02_0900 Heart left ventricle_LV1452 1226 2 442 35 3 209 2061 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_091901049 chr11:65637616-65655165 Sample_02_0919 Heart left ventricle_DCM_LV1532 1049 3 461 36 3 233 2248 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_119100865 chr11:65637664-65654017 Sample_02_1191 Brain GBM25 865 4 424 35 3 207 1983 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_131400636 chr11:65637723-65654075 Sample_02_1314 Brain hMGLs_TREM2-KO 636 3 424 35 3 207 1991 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_092000939 chr11:65637797-65654159 Sample_02_0920 Heart left ventricle_DCM_LV1535 939 2 425 35 3 208 2011 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_106500419 chr11:65637832-65654131 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 419 2 424 34 2 208 2008 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_059300445 chr11:65637842-65654125 Sample_02_0593 Fetal spleenocytes fetal naive T cells 445 2 424 34 2 208 2006 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3,EHBP1L1,LTBP3,KAT5,EIF1AD,CTSW,CFL1,SSSCA1,SCYL1,FRMD8,RNASEH2C,AP5B1,FAM89B
SE_02_091500845 chr11:65638030-65654408 Sample_02_0915 Heart left ventricle_DCM_LV1371 845 2 432 34 2 209 2037 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_095000929 chr11:65638047-65660603 Sample_02_0950 Umbilical vein HUVEC_WT 929 6 606 41 3 261 2726 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_131300611 chr11:65638063-65654764 Sample_02_1313 Brain hMGLs_CD33_SNP 611 3 435 32 2 225 2108 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_083100528 chr11:65638078-65654631 Sample_02_0831 Umblical vein HUVECs_TNF0min 528 6 433 32 2 212 2073 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_081000520 chr11:65640069-65653373 Sample_02_0810 Mammary gland T47D noSerum 520 3 330 22 1 170 1683 SIPA1,MIR4489,MIR4690,KCNK7,MAP3K11,PCNXL3,RELA
SE_02_141601018 chr11:65641872-65664492 Sample_02_1416 Brain SF9402 1018 4 572 35 3 223 2519 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_146500441 chr11:65642197-65665047 Sample_02_1465 Ovary CAOV4cis 441 4 578 37 3 223 2483 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_155300672 chr11:65642465-65665971 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 672 5 596 40 3 216 2422 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_064300873 chr11:65642684-65653769 Sample_02_0643 Mammary gland MDA-MB-436 873 6 277 18 2 87 1189 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_081800157 chr11:65643353-65672035 Sample_02_0818 Ovary High-grade serous ovarian cancer 157 6 736 56 4 198 2344 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3,RNASEH2C
SE_02_098901298 chr11:65643422-65665199 Sample_02_0989 Kidney kidney cortex_WT 1298 6 556 37 3 198 2344 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3,LTBP3,CFL1,RNASEH2C,FAM89B
SE_02_113100765 chr11:65643466-65653968 Sample_02_1131 Pancreas T3M4 wt 765 5 261 19 2 86 1201 SIPA1,MIR4489,RELA,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_125800865 chr11:65644418-65665210 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 865 5 541 35 3 197 2344 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_104602761 chr11:65644893-65670069 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2761 7 650 46 4 197 2308 SIPA1,MIR4489,RELA,KAT5,MIR4690,KCNK7,MAP3K11,PCNXL3
SE_02_076500600 chr11:65646167-65664309 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 600 5 473 28 3 183 2099 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3
SE_02_064501856 chr11:65646788-65653928 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1856 3 182 11 2 48 802 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
SE_02_067401016 chr11:65646945-65655348 Sample_02_0674 Endometrium E1_FA 1016 3 220 12 2 73 1084 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
SE_02_090801124 chr11:65646990-65666983 Sample_02_0908 Heart left ventricle_DCM_LV1262 1124 8 509 31 3 158 1914 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3
SE_01_009301154 chr11:65647009-65665673 Sample_01_0093 Aorta ascending aorta 1154 5 484 28 3 157 1911 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3
SE_02_067201213 chr11:65647034-65655579 Sample_02_0672 Endometrium endometrium cancer_DSG 1213 2 224 13 2 72 1086 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
SE_01_010900594 chr11:65647083-65664978 Sample_01_0109 Colon transverse colon_54y 594 3 469 28 3 156 1896 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3,EHBP1L1,SSSCA1,SNX15,SCYL1,AP5B1,TIGD3,SNX32,FAM89B
SE_02_093000939 chr11:65647103-65665230 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 939 3 473 28 3 156 1890 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3,EHBP1L1,CTSW,FIBP,FAM89B
SE_02_142700613 chr11:65647116-65665202 Sample_02_1427 Shoulder fibroblast_343 613 3 471 28 3 156 1889 SIPA1,MIR4489,RELA,KAT5,MIR4690,MAP3K11,PCNXL3
SE_02_135100053 chr11:65647129-65660216 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 53 6 357 20 3 100 1485 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
SE_02_135300070 chr11:65647141-65660214 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 70 6 357 20 3 100 1479 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
SE_02_104901238 chr11:65649099-65655420 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1238 1 187 11 2 57 858 SIPA1,MIR4489,RELA,MIR4690,PCNXL3,MAP3K11
Genomic distribution of SEs associated with MIR4489
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR4489

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)