SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000263894
Gene: MIR3925 Gene type: miRNA
Strand: - External links:
Genomic region: chr6:36622436-36622512 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_023700441 chr6:36566888-36663543 Sample_02_0237 Colon V389 441 22 2837 322 13 241 668 SRSF3,MIR3925,CDKN1A,STK38
SE_02_082600262 chr6:36570568-36635261 Sample_02_0826 Stomach gastric tumor 262 28 1938 228 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_111100348 chr6:36571643-36643778 Sample_02_1111 Other HGrC1_SMAD2/3KO 348 21 2136 234 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_126500364 chr6:36571862-36643839 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 364 13 2131 234 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_126900127 chr6:36572087-36634570 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 127 13 1871 221 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_116700279 chr6:36572469-36643525 Sample_02_1167 Biliary H69_TGF Vehicle_1 279 21 2106 234 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_116600324 chr6:36572490-36644641 Sample_02_1166 Biliary H69_TGF beta_16h_1 324 23 2136 237 5 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_088600758 chr6:36572870-36625670 Sample_02_0886 Skin foreskin_ p63KLF4 758 16 1602 191 3 190 668 MIR3925,SRSF3,STK38,PANDAR
SE_02_056901083 chr6:36573844-36644457 Sample_02_0569 Periodontal ligament mesenchymal stem cell 1083 17 2094 236 5 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_116800297 chr6:36575283-36644518 Sample_02_1168 Biliary H69_TGF Vehicle_2 297 23 2064 236 5 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_116900362 chr6:36575508-36644649 Sample_02_1169 Biliary H69_TGF beta_16h_2 362 29 2062 236 5 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_007200729 chr6:36576545-36650561 Sample_01_0072 Breast epithelium breast-epithelium 729 15 2200 252 5 219 668 SRSF3,MIR3925,CDKN1A,STK38
SE_02_142800807 chr6:36576622-36645365 Sample_02_1428 Shoulder fibroblast_316 807 14 2051 236 5 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_142701002 chr6:36576709-36628028 Sample_02_1427 Shoulder fibroblast_343 1002 11 1585 198 3 198 668 MIR3925,SRSF3,PANDAR,CDKN1A,STK38
SE_02_122500313 chr6:36576780-36629461 Sample_02_1225 Bone marrow RAJI 313 22 1618 202 3 203 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_010700741 chr6:36576903-36629909 Sample_01_0107 Esophagus esophagus squamous epithelium 741 13 1617 202 3 203 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_007800695 chr6:36577437-36634716 Sample_01_0078 Heart left ventricle heart-left-ventricle 695 9 1731 221 3 210 668 SRSF3,MIR3925,CDKN1A,STK38
SE_01_007500998 chr6:36577827-36630037 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 998 9 1589 203 3 203 668 SRSF3,MIR3925,CDKN1A,STK38
SE_01_008900699 chr6:36578222-36628918 Sample_01_0089 Transverse colon transverse-colon 699 7 1556 201 3 203 668 SRSF3,MIR3925,CDKN1A,STK38
SE_01_010900481 chr6:36578813-36643887 Sample_01_0109 Colon transverse colon_54y 481 15 1939 233 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_088901124 chr6:36578935-36634516 Sample_02_0889 Heart left ventricle_LV1183 1124 10 1679 220 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_129600272 chr6:36579076-36641605 Sample_02_1296 Perigastric lymph node Perigastric lymph node 272 13 1880 232 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_044500726 chr6:36579098-36650973 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 726 16 2129 252 5 219 668 MIR3925,SRSF3,CDKN1A,PANDAR,RAB44,STK38
SE_02_129900266 chr6:36579107-36643825 Sample_02_1299 Liver liver 266 16 1928 233 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_121900513 chr6:36579182-36630397 Sample_02_1219 Bone marrow H929 513 10 1564 203 3 203 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_009400783 chr6:36579195-36629724 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 783 16 1541 201 3 203 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_009800787 chr6:36579288-36643587 Sample_01_0098 Heart left ventricle_51y 787 15 1915 232 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_008500867 chr6:36579307-36634883 Sample_01_0085 Stomach stomach 867 8 1683 222 3 210 668 SRSF3,MIR3925,CDKN1A,STK38
SE_02_089801225 chr6:36579336-36634522 Sample_02_0898 Heart left ventricle_LV1356 1225 19 1665 219 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_092200601 chr6:36579528-36634811 Sample_02_0922 Heart fetal heart_PCW10_12434 601 12 1675 222 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_074700847 chr6:36579591-36634557 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 847 25 1661 219 3 210 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_009300898 chr6:36579739-36643638 Sample_01_0093 Aorta ascending aorta 898 20 1906 231 4 211 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_00_005600606 chr6:36579848-36651996 Sample_00_0056 Sigmoid colon sigmoid colon 3y 606 24 2138 254 6 219 668 MIR3925,SRSF3,CDKN1A,PANDAR,RAB44,STK38
SE_02_122400553 chr6:36580083-36629611 Sample_02_1224 Bone marrow normal plasma cell 553 22 1518 200 3 201 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_125300549 chr6:36589914-36644207 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 549 14 1628 162 4 206 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_01_009000700 chr6:36592626-36630384 Sample_01_0090 Lung upper-lobe-of-left-lung 700 6 1179 123 2 198 668 SRSF3,MIR3925,CDKN1A,STK38
SE_02_092400582 chr6:36592719-36634494 Sample_02_0924 Heart fetal heart_PCW10_12569 582 15 1283 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_088801034 chr6:36592904-36634395 Sample_02_0888 Heart left ventricle_LV1160 1034 6 1278 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_089201293 chr6:36592990-36643447 Sample_02_0892 Heart left ventricle_LV1215 1293 16 1521 152 3 206 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_047800663 chr6:36593017-36652645 Sample_02_0478 Colon normal colon mucosa 663 17 1788 179 5 214 668 MIR3925,SRSF3,CDKN1A,PANDAR,RAB44,STK38
SE_02_089101170 chr6:36593073-36634556 Sample_02_0891 Heart left ventricle_LV1202 1170 11 1280 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_092100551 chr6:36593096-36643599 Sample_02_0921 Heart embryonic heart_CS22 551 16 1525 152 3 206 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_057800490 chr6:36593099-36629617 Sample_02_0578 Blood MOLM-13_sgSIK3e4 490 7 1149 121 2 198 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_091301153 chr6:36593105-36634412 Sample_02_0913 Heart left ventricle_DCM_LV1304 1153 15 1277 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_090500983 chr6:36593147-36634486 Sample_02_0905 Heart left ventricle_DCM_LV1033 983 14 1276 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_088700847 chr6:36593171-36633916 Sample_02_0887 Heart left ventricle_LV1121 847 9 1260 137 2 203 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_090401032 chr6:36593192-36634605 Sample_02_0904 Heart left ventricle_DCM_LV1028 1032 14 1278 139 2 205 668 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_02_154101145 chr6:36594362-36627966 Sample_02_1541 Nasopharyngeal HNE1 1145 8 1074 110 2 175 624 MIR3925,SRSF3,PANDAR,CDKN1A,STK38
SE_02_129700512 chr6:36595467-36634688 Sample_02_1297 Lung lung 512 16 1198 127 2 187 566 MIR3925,SRSF3,CDKN1A,PANDAR,STK38
SE_00_004900327 chr6:36603821-36653173 Sample_00_0049 Small intestine small intestine 30y 327 16 1480 152 4 42 128 MIR3925,SRSF3,CDKN1A,PANDAR,RAB44
SE_02_033000057 chr6:36607428-36685729 Sample_02_0330 Endoderm MHG 57 12 2239 250 16 179 551 CDKN1A,MIR3925,SRSF3
SE_02_024200400 chr6:36616324-36684585 Sample_02_0242 Colon V481 400 9 1904 213 15 179 487 CDKN1A,MIR3925,SRSF3
SE_02_035800451 chr6:36616535-36684739 Sample_02_0358 Colon LS180 451 8 1903 211 15 179 516 CDKN1A,MIR3925,SRSF3
SE_02_104602368 chr6:36616878-36643808 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2368 10 762 64 2 34 44 MIR3925,SRSF3,CDKN1A,PANDAR
SE_02_033200161 chr6:36618559-36703010 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 161 11 2367 258 20 196 978 CDKN1A,MIR3925,SRSF3
SE_02_033400212 chr6:36618937-36702307 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 212 13 2332 253 20 196 978 CDKN1A,MIR3925,SRSF3
SE_02_025600365 chr6:36620520-36704017 Sample_02_0256 Peripheral blood MV411 365 17 2338 255 20 196 978 CDKN1A,MIR3925,SRSF3
SE_02_073900560 chr6:36620748-36638861 Sample_02_0739 Blood Nalm6 560 1 515 50 2 30 44 MIR3925,SRSF3,CDKN1A,PANDAR
SE_02_033500233 chr6:36622147-36683062 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 233 11 1685 194 14 166 348 CDKN1A,MIR3925,SRSF3
Genomic distribution of SEs associated with MIR3925
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR3925

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)