SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000223109
Gene: MIR1538 Gene type: miRNA
Strand: - External links:
Genomic region: chr16:69565808-69565868 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103100162 chr16:69499221-69568314 Sample_02_1031 Head and neck SCC1 contol 162 23 1832 212 11 222 283 MIR1538,NFAT5
SE_02_078300866 chr16:69501551-69570037 Sample_02_0783 Blood MEC2 866 16 1799 213 11 234 303 MIR1538,NFAT5
SE_02_098900391 chr16:69545392-69661532 Sample_02_0989 Kidney kidney cortex_WT 391 49 2722 367 9 354 589 MIR1538,NFAT5
SE_02_083601005 chr16:69553326-69570102 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 1005 5 412 48 1 140 303 MIR1538,NFAT5
SE_02_031600559 chr16:69554399-69570202 Sample_02_0316 Neuroblastoma CHP212 559 2 386 44 1 139 303 MIR1538,NFAT5
SE_02_067200730 chr16:69557813-69570152 Sample_02_0672 Endometrium endometrium cancer_DSG 730 6 285 34 0 133 303 MIR1538,NFAT5
SE_02_067400641 chr16:69557988-69569681 Sample_02_0674 Endometrium E1_FA 641 6 274 33 0 132 303 MIR1538,NFAT5
SE_02_149201027 chr16:69561665-69596600 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1027 9 803 109 2 142 303 MIR1538,NFAT5
SE_02_045300585 chr16:69561711-69614246 Sample_02_0453 Neuroblastoma SJNB3 585 14 1203 161 3 144 303 MIR1538,NFAT5
SE_02_137100913 chr16:69561852-69568272 Sample_02_1371 Pancreas Patu899S-untreated 913 4 137 19 0 101 283 MIR1538,NFAT5
SE_02_032200776 chr16:69561895-69569084 Sample_02_0322 Colon Caco-2 776 1 154 20 0 111 303 MIR1538,NFAT5
SE_02_071200940 chr16:69561996-69569912 Sample_02_0712 Pancreas BxPC3_sgNEG 940 4 172 23 0 113 303 MIR1538,NFAT5
SE_02_142900694 chr16:69562105-69626772 Sample_02_1429 Blood GM12878_WT 694 16 1506 200 4 155 340 MIR1538,NFAT5,NOB1,WWP2
SE_02_028600608 chr16:69562119-69568115 Sample_02_0286 Liver HuH7_IL-1alpha_1h 608 1 127 19 0 92 283 MIR1538,NFAT5
SE_02_055500147 chr16:69562256-69578171 Sample_02_0555 Other HAP1_WT 147 5 354 56 1 114 303 MIR1538,NFAT5
SE_02_103500138 chr16:69562383-69643226 Sample_02_1035 Mammary gland HCC70_Vehicle 138 32 1888 245 5 197 340 MIR1538,NFAT5
SE_02_072300356 chr16:69562460-69599914 Sample_02_0723 Pancreas MIAPaca2 WT 356 8 870 121 2 132 303 MIR1538,NFAT5
SE_02_061701130 chr16:69562953-69568310 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1130 1 111 18 0 91 283 MIR1538,NFAT5
SE_02_042400599 chr16:69563243-69570142 Sample_02_0424 Colon SW620 599 1 145 21 0 112 303 MIR1538,NFAT5
SE_02_138200119 chr16:69563274-69621958 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 119 32 1370 185 4 141 303 MIR1538,NFAT5
SE_02_103400757 chr16:69563282-69569976 Sample_02_1034 Blood AML cell 757 2 139 21 0 111 303 MIR1538,NFAT5
SE_02_122300900 chr16:69563288-69568084 Sample_02_1223 Bone marrow KMS28BM 900 2 97 17 0 91 283 MIR1538,NFAT5
SE_02_136000928 chr16:69563306-69568161 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 928 2 98 17 0 91 283 MIR1538,NFAT5
SE_02_103800303 chr16:69563306-69569827 Sample_02_1038 Pharynx FaDu LPS 303 1 138 20 0 111 303 MIR1538,NFAT5
SE_02_136200910 chr16:69563329-69568672 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 910 2 111 16 0 102 298 MIR1538,NFAT5
SE_02_131900088 chr16:69563467-69568358 Sample_02_1319 Connective Tissue HT1080_DDIT3 88 2 98 15 0 91 284 MIR1538,NFAT5
SE_01_008401595 chr16:69563497-69568383 Sample_01_0084 Spleen spleen 1595 1 100 15 0 91 284 MIR1538,NFAT5
SE_02_105300186 chr16:69563504-69619772 Sample_02_1053 Esophagus OACM5.1 186 23 1314 174 3 140 303 MIR1538,NFAT5
SE_02_136100909 chr16:69563515-69568149 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 909 2 94 15 0 91 283 MIR1538,NFAT5
SE_02_122000396 chr16:69563526-69567765 Sample_02_1220 Bone marrow JJN3 396 1 86 13 0 89 283 MIR1538,NFAT5
SE_02_138300450 chr16:69563539-69568338 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 450 1 97 15 0 91 284 MIR1538,NFAT5
SE_02_064500193 chr16:69563542-69569575 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 193 3 128 17 0 110 303 MIR1538,NFAT5
SE_02_138100491 chr16:69563552-69568793 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 491 1 110 16 0 103 303 MIR1538,NFAT5
SE_02_058400408 chr16:69563587-69570118 Sample_02_0584 Lung H1299 WT 408 1 136 18 0 112 303 MIR1538,NFAT5
SE_02_108400382 chr16:69563611-69576925 Sample_02_1084 Blood KBM7-derived near haploid cells 382 4 293 45 1 113 303 MIR1538,NFAT5
SE_02_004900640 chr16:69563614-69568055 Sample_02_0049 Embryo endodermal CyT49_GTtoH 640 1 92 14 0 91 283 MIR1538,NFAT5
SE_02_136600522 chr16:69563622-69568118 Sample_02_1366 Pancreas BxPC3-untreated 522 2 93 14 0 91 283 MIR1538,NFAT5
SE_00_002400970 chr16:69563632-69567704 Sample_00_0024 Embryo mesendoderm 970 2 83 11 0 89 283 MIR1538,NFAT5
SE_02_003901001 chr16:69563634-69568171 Sample_02_0039 Embryo AFG 1001 1 93 14 0 91 283 MIR1538,NFAT5
SE_02_003801802 chr16:69563641-69567958 Sample_02_0038 Embryo DE 1802 1 89 13 0 91 283 MIR1538,NFAT5
SE_02_004001094 chr16:69563650-69568032 Sample_02_0040 Embryo PFG 1094 1 91 14 0 91 283 MIR1538,NFAT5
SE_02_152500360 chr16:69563684-69579939 Sample_02_1525 Stomach N87 DMSO 360 4 363 56 1 114 303 MIR1538,NFAT5
SE_02_148300649 chr16:69563688-69593704 Sample_02_1483 Bone RD-ES 649 9 678 94 2 129 303 MIR1538,NFAT5
SE_02_064900265 chr16:69563696-69567964 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 265 1 89 13 0 91 283 MIR1538,NFAT5
SE_02_071300939 chr16:69563698-69570249 Sample_02_0713 Pancreas BxPC3_sgTP63 939 4 138 18 0 112 303 MIR1538,NFAT5
SE_02_158401421 chr16:69563747-69567746 Sample_02_1584 Brain U87 GBM_Mock 1421 1 84 11 0 89 283 MIR1538,NFAT5
SE_02_064600170 chr16:69563760-69568294 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 170 1 95 13 0 91 283 MIR1538,NFAT5
SE_02_070701047 chr16:69563775-69570059 Sample_02_0707 Pancreas BxPC3 WT 1047 4 136 17 0 112 303 MIR1538,NFAT5
SE_02_065000135 chr16:69563781-69569297 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 135 2 119 15 0 106 303 MIR1538,NFAT5
SE_02_132000948 chr16:69563797-69567528 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 948 1 79 10 0 88 283 MIR1538,NFAT5
SE_02_064400159 chr16:69563804-69568315 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 159 1 95 13 0 91 283 MIR1538,NFAT5
SE_02_027400684 chr16:69563808-69567778 Sample_02_0274 Endometriosis hTERT_KD 684 1 83 11 0 89 283 MIR1538,NFAT5
SE_02_136800163 chr16:69563811-69597150 Sample_02_1368 Pancreas MIA PaCa-2-untreated 163 10 770 104 2 132 303 MIR1538,NFAT5
SE_02_076000789 chr16:69563828-69570104 Sample_02_0760 Ovary BIN-67_SMARCA4 789 1 134 17 0 112 303 MIR1538,NFAT5
SE_01_010400603 chr16:69563835-69580557 Sample_01_0104 Lung upper lobe of left lung 603 4 372 56 1 114 303 MIR1538,NFAT5
SE_02_146800939 chr16:69563837-69571562 Sample_02_1468 Blood HUDEP-2_WT 939 1 164 23 1 113 303 MIR1538,NFAT5
SE_02_004800678 chr16:69563846-69568016 Sample_02_0048 Embryo endodermal CyT49_HE 678 2 86 12 0 91 283 MIR1538,NFAT5
SE_02_103700640 chr16:69563853-69569222 Sample_02_1037 Pharynx FaDu Control 640 2 112 15 0 106 303 MIR1538,NFAT5
SE_02_049400582 chr16:69563855-69568094 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 582 2 89 13 0 91 283 MIR1538,NFAT5
SE_01_010701305 chr16:69563888-69569083 Sample_01_0107 Esophagus esophagus squamous epithelium 1305 2 108 14 0 105 303 MIR1538,NFAT5
SE_02_088601816 chr16:69563890-69570959 Sample_02_0886 Skin foreskin_ p63KLF4 1816 1 149 18 0 113 303 MIR1538,NFAT5
SE_02_135401109 chr16:69564161-69568303 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 1109 1 85 13 0 87 283 MIR1538,NFAT5
SE_02_017000436 chr16:69564194-69634006 Sample_02_0170 Prostate LNCaP_R1881_DOX 436 10 1604 213 5 171 340 MIR1538,NFAT5
SE_02_140800362 chr16:69564406-69580773 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 362 4 364 57 1 105 303 MIR1538,NFAT5
SE_02_081601602 chr16:69564835-69568123 Sample_02_0816 Ovary Clear cell ovarian cancer 1602 1 71 12 0 81 283 MIR1538,NFAT5
SE_02_119301098 chr16:69564907-69568291 Sample_02_1193 Brain GBM27 1098 1 72 12 0 81 283 MIR1538,NFAT5
SE_02_066400477 chr16:69564934-69584784 Sample_02_0664 Prostate LNCaP_DMSO 477 8 439 63 1 100 303 MIR1538,NFAT5
SE_02_044400862 chr16:69565056-69577366 Sample_02_0444 Bone osteosarcoma tumor P10 862 2 276 43 1 97 303 MIR1538,NFAT5
SE_02_120200736 chr16:69565094-69568316 Sample_02_1202 Brain GBM38 736 1 69 12 0 73 283 MIR1538,NFAT5
Genomic distribution of SEs associated with MIR1538
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR1538

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)