SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000073111
Gene: MCM2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:127598410-127622436 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_043100424 chr3:127583749-127601204 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 424 5 438 11 1 29 410 MCM2,TPRA1,PODXL2
SE_02_030000058 chr3:127584349-127604916 Sample_02_0300 Neuroblastoma CLB-PE 58 1 529 14 1 32 516 MCM2,TPRA1,PODXL2
SE_02_017700099 chr3:127587027-127601906 Sample_02_0177 Urinary bladder J82 99 2 366 7 1 29 410 MCM2,TPRA1,PODXL2
SE_02_103000234 chr3:127587540-127606437 Sample_02_1030 Colon DKO 234 5 496 13 1 55 678 TPRA1,MCM2,MIR6825,PODXL2,MIR7976,LINC01471
SE_02_142900942 chr3:127587765-127615224 Sample_02_1429 Blood GM12878_WT 942 6 719 16 1 73 1059 TPRA1,MCM2,MIR6825,PODXL2,MIR7976,LINC01471,ABTB1
SE_02_076201457 chr3:127587811-127616564 Sample_02_0762 Podocyte podocyte_CTL 1457 4 756 17 1 80 1142 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_061500714 chr3:127587872-127601648 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 714 3 348 5 1 28 410 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_127300391 chr3:127588144-127604024 Sample_02_1273 Cervix HeLa 391 3 402 8 1 28 410 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_030400620 chr3:127588647-127601538 Sample_02_0304 Neuroblastoma N206 620 2 324 5 1 28 410 MCM2,TPRA1,PODXL2
SE_01_003600387 chr3:127588783-127601042 Sample_01_0036 Cervix HeLa-S3 387 2 312 5 1 28 410 MCM2,TPRA1,PODXL2,C2,ABTB1
SE_02_083400601 chr3:127588849-127612952 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 601 6 648 14 1 73 1059 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_083500617 chr3:127588881-127610723 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 617 4 590 13 1 73 989 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_083600575 chr3:127588907-127611264 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 575 4 606 13 1 73 1059 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_083300639 chr3:127588980-127610508 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 639 3 583 13 1 73 977 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_076300961 chr3:127589110-127616025 Sample_02_0763 Podocyte podocyte_DEX 961 4 712 16 1 80 1117 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_133200390 chr3:127589186-127601910 Sample_02_1332 Blood Monomac6_CTRL 390 3 324 6 1 28 410 TPRA1,MCM2,MIR7976,PODXL2,MIR6825
SE_02_101800132 chr3:127589215-127609173 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 132 2 537 12 1 73 964 TPRA1,MCM2,MIR7976,PODXL2,MIR6825,ABTB1
SE_02_143201503 chr3:127597799-127615166 Sample_02_1432 Bone A673 STAG2 WT 1503 6 465 11 1 66 874 MCM2,MIR7976,PODXL2,MIR6825,TPRA1
SE_02_103601971 chr3:127601444-127641760 Sample_02_1036 Mammary gland HCC70_XY018 1971 11 1034 35 0 145 1705 PODXL2,MCM2,MIR6825,TPRA1,MIR7976,ABTB1
SE_02_104600067 chr3:127603415-127791061 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 67 86 5363 345 12 404 5105 PODXL2,MCM2,ABTB1,MGLL,MIR6825,TPRA1,MIR7976
Genomic distribution of SEs associated with MCM2
Genome Browser

The strength of the tissue affected by the gene

Expression of MCM2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)