SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000142733
Gene: MAP3K6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:27354067-27366961 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_008400841 chr1:27326599-27370691 Sample_01_0084 Spleen spleen 841 10 1273 103 3 337 4991 SYTL1,FCN3,TMEM222,MAP3K6,LOC644961,CD164L2,GPR3
SE_02_104300405 chr1:27327469-27370362 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 405 29 1243 102 3 337 4934 TMEM222,SYTL1,MAP3K6,FCN3,ACTG1P20,GPR3,CD164L2,RNU6-48P
SE_02_147900430 chr1:27328788-27367830 Sample_02_1479 Bone EW-7 430 9 1138 93 3 333 4806 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_082700139 chr1:27329017-27371231 Sample_02_0827 Stomach normal gastric 139 6 1235 100 3 337 5080 TMEM222,SYTL1,MAP3K6,FCN3,ACTG1P20,GPR3,CD164L2,RNU6-48P
SE_02_138400800 chr1:27330805-27365106 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 800 8 1023 82 3 276 4484 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_01_011400187 chr1:27330883-27367905 Sample_01_0114 Colon HCT116_encode 187 8 1081 88 3 329 4734 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_050600465 chr1:27332530-27367914 Sample_02_0506 Esophagus TE5_1 465 12 1035 86 3 321 4531 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_051700455 chr1:27332531-27367914 Sample_02_0517 Esophagus TE5 455 12 1035 86 3 321 4531 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_050500623 chr1:27332547-27368110 Sample_02_0505 Esophagus KYSE70_1 623 10 1040 87 3 321 4531 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_051600617 chr1:27332547-27368118 Sample_02_0516 Esophagus KYSE70 617 10 1040 87 3 321 4531 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_104200463 chr1:27333040-27360235 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 463 5 814 65 2 180 3201 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_087400305 chr1:27333852-27357597 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 305 6 706 60 2 148 2649 TMEM222,SYTL1,MAP3K6,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_001900432 chr1:27335167-27367777 Sample_02_0019 Embryo Neural crest cells 432 8 940 77 2 296 4319 SYTL1,TMEM222,MAP3K6,FCN3,LOC644961,CD164L2,GPR3
SE_02_021600323 chr1:27335239-27361599 Sample_02_0216 Skin NHEK_scramble 323 6 772 61 1 181 3307 SYTL1,TMEM222,MAP3K6,FCN3,LOC644961,CD164L2,GPR3
SE_02_003200657 chr1:27338478-27367596 Sample_02_0032 Pancreas pancreatic-islets-M 657 5 814 72 2 292 3978 SYTL1,MAP3K6,FCN3,TMEM222,LOC644961,CD164L2,GPR3
SE_02_005600942 chr1:27338756-27365246 Sample_02_0056 Mammary gland HMEC 942 6 759 67 2 239 3708 SYTL1,MAP3K6,FCN3,TMEM222,LOC644961,CD164L2,GPR3
SE_02_076500360 chr1:27338931-27369540 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 360 15 846 76 2 295 4083 SYTL1,MAP3K6,FCN3,TMEM222,ACTG1P20,GPR3,CD164L2,RNU6-48P
SE_02_068100380 chr1:27339432-27360863 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 380 7 604 54 1 164 2808 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_035200530 chr1:27339885-27366509 Sample_02_0352 Colon HCT116 530 5 754 66 2 256 3832 SYTL1,MAP3K6,FCN3,TMEM222,LOC644961,CD164L2,GPR3
SE_02_122401160 chr1:27340141-27367393 Sample_02_1224 Bone marrow normal plasma cell 1160 7 762 66 2 292 3978 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_032400210 chr1:27340588-27368396 Sample_02_0324 Colon SW48 210 5 773 67 2 292 3978 SYTL1,MAP3K6,FCN3,TMEM222,LOC644961,CD164L2,GPR3
SE_02_081700570 chr1:27340677-27367685 Sample_02_0817 Ovary Epithelial ovarian cancer 570 5 753 64 2 292 3978 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_00_004300370 chr1:27340961-27407540 Sample_00_0043 Stomach stomach_96d 370 9 1782 127 3 638 6687 CD164L2,SYTL1,FCN3,WASF2,GPR3,MAP3K6,TMEM222,LOC644961
SE_02_107100352 chr1:27341366-27357979 Sample_02_1071 Blood Jurkat_WT 352 3 459 42 1 121 2194 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_064501759 chr1:27341406-27357611 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1759 3 442 40 1 119 2119 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_010600403 chr1:27341738-27361224 Sample_02_0106 Skin NHEK_M 403 5 551 46 1 167 2912 SYTL1,MAP3K6,FCN3,TMEM222,LOC644961,CD164L2,GPR3
SE_02_112000633 chr1:27343126-27369546 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 633 6 732 61 2 279 3956 SYTL1,MAP3K6,FCN3,TMEM222,ACTG1P20,GPR3,CD164L2,RNU6-48P
SE_02_103501415 chr1:27343945-27364452 Sample_02_1035 Mammary gland HCC70_Vehicle 1415 11 593 51 2 207 3447 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_02_087300498 chr1:27344094-27365315 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 498 8 613 51 2 217 3580 SYTL1,MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,FCN3,RNU6-48P
SE_01_009200833 chr1:27348793-27381705 Sample_01_0092 Vagina vagina 833 4 924 67 2 266 4533 CD164L2,SYTL1,FCN3,MAP3K6,TMEM222,LOC644961,GPR3
SE_00_002200322 chr1:27357139-27407354 Sample_00_0022 Lung lung_30y 322 11 1337 86 2 527 4632 CD164L2,WASF2,FCN3,GPR3,MAP3K6,SYTL1,TMEM222,LOC644961
SE_01_009000647 chr1:27364485-27378034 Sample_01_0090 Lung upper-lobe-of-left-lung 647 1 363 17 0 72 1154 FCN3,MAP3K6,SYTL1,TMEM222,LOC644961,CD164L2,GPR3
SE_00_003400278 chr1:27364628-27407608 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 278 8 1113 70 1 409 3082 CD164L2,WASF2,FCN3,GPR3,MAP3K6,SYTL1,TMEM222,LOC644961
SE_00_001100620 chr1:27364710-27382447 Sample_00_0011 Esophagus esophagus 620 3 466 25 0 95 1585 CD164L2,FCN3,MAP3K6,SYTL1,TMEM222,LOC644961,GPR3
SE_02_064300693 chr1:27364799-27367748 Sample_02_0643 Mammary gland MDA-MB-436 693 1 68 5 0 58 327 MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,SYTL1,FCN3,RNU6-48P
SE_01_010701164 chr1:27364863-27368878 Sample_01_0107 Esophagus esophagus squamous epithelium 1164 1 94 9 0 56 318 MAP3K6,TMEM222,ACTG1P20,GPR3,CD164L2,SYTL1,FCN3,RNU6-48P,AHDC1
Genomic distribution of SEs associated with MAP3K6
Genome Browser

The strength of the tissue affected by the gene

Expression of MAP3K6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)