SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000175489
Gene: LRRC25 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:18391137-18397622 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_146700007 chr19:18348521-18391865 Sample_02_1467 Blood HUDEP-2_LRFKO 7 3 1223 128 5 39 2125 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_01_005700477 chr19:18349038-18392331 Sample_01_0057 Pancreas duct PANC-1 477 8 1226 132 6 39 2173 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_040700158 chr19:18349154-18391262 Sample_02_0407 Brain BT16 158 7 1180 117 5 39 1956 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_086600179 chr19:18349183-18391772 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 179 13 1200 124 5 39 2034 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_086200230 chr19:18349273-18391182 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 230 11 1180 117 5 39 1927 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_086500236 chr19:18349389-18391774 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 236 17 1196 124 5 39 2030 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_030100454 chr19:18349548-18391521 Sample_02_0301 Neuroblastoma GIMEN 454 5 1184 122 5 39 1994 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_095000334 chr19:18349815-18394247 Sample_02_0950 Umbilical vein HUVEC_WT 334 25 1264 133 6 39 2152 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_036400039 chr19:18352939-18391454 Sample_02_0364 Skeletal muscle CTR 39 1 1080 105 4 39 1985 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_146800001 chr19:18360299-18392973 Sample_02_1468 Blood HUDEP-2_WT 1 1 923 96 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_146600001 chr19:18360739-18393285 Sample_02_1466 Blood HUDEP-2_BCL11AKO 1 1 928 97 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_092900215 chr19:18360883-18394482 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 215 18 953 98 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4,KIAA1683,CRLF1,JUND,IFI30
SE_02_076400057 chr19:18361720-18391335 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 57 9 840 84 3 26 1763 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_03_001300603 chr19:18362343-18403008 Sample_03_0013 Lung A549 603 4 1146 110 5 37 2319 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_132000112 chr19:18362914-18392929 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 112 10 860 94 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_00_002300070 chr19:18362991-18419268 Sample_00_0023 Embryo mesenchymal-stem-cell 70 13 1548 148 6 65 2336 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_153800510 chr19:18363087-18392997 Sample_02_1538 Mammary gland MDA-MB-231 510 8 853 93 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_151900275 chr19:18363095-18392875 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 275 17 848 92 4 26 1949 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_011200485 chr19:18363095-18393486 Sample_02_0112 Connective tissue HT1080_untreated 485 5 869 94 4 26 1949 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_00_002201089 chr19:18363220-18394134 Sample_00_0022 Lung lung_30y 1089 9 882 93 4 26 1945 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_01_008500736 chr19:18363285-18394945 Sample_01_0085 Stomach stomach 736 5 904 95 4 26 1930 LRRC25,GDF15,PGPEP1,MIR3189,LSM4,ISYNA1,SSBP4
SE_02_129700436 chr19:18363816-18394169 Sample_02_1297 Lung lung 436 10 859 91 4 23 1830 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_135101000 chr19:18363891-18392565 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1000 5 807 88 4 23 1811 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_02_126800031 chr19:18363913-18392652 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 31 7 807 87 4 23 1809 LRRC25,PGPEP1,MIR3189,GDF15,ISYNA1,LSM4,SSBP4
SE_00_000600122 chr19:18364433-18419712 Sample_00_0006 Blood CD14-positive-monocyte 122 7 1491 144 6 73 2253 SSBP4,GDF15,PGPEP1,LRRC25,MIR3189,LSM4,ISYNA1
SE_02_092700441 chr19:18388081-18418500 Sample_02_0927 Peripheral blood neutrophils_US 441 10 810 79 3 50 868 LRRC25,GDF15,MIR3189,ISYNA1,SSBP4,PGPEP1
SE_02_139400140 chr19:18388633-18421740 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 140 7 868 81 3 56 959 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1,PGPEP1
SE_02_130400483 chr19:18388762-18434106 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 483 12 1253 108 5 152 2250 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1,PGPEP1
SE_02_130300607 chr19:18388798-18433844 Sample_02_1303 Lymphoma RL_tazemetostat 607 13 1248 108 5 130 2144 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1,PGPEP1
SE_02_152900947 chr19:18390051-18430498 Sample_02_1529 Peripheral blood neutrophils_0BC75 947 13 1105 95 5 64 1128 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1,PGPEP1
SE_02_131700242 chr19:18392016-18418398 Sample_02_1317 Brain hMGLs_SORL1-KO 242 7 706 60 3 39 424 LRRC25,GDF15,MIR3189,ISYNA1,SSBP4
SE_02_131800335 chr19:18392068-18418298 Sample_02_1318 Brain hMGLs_SORL1-A528T 335 7 700 58 2 39 415 LRRC25,GDF15,MIR3189,ISYNA1,SSBP4
SE_02_134800273 chr19:18392107-18419230 Sample_02_1348 Leukophereses leukophereses_p408 273 7 719 59 2 39 419 LRRC25,GDF15,MIR3189,ISYNA1,SSBP4
SE_02_082600570 chr19:18392155-18431291 Sample_02_0826 Stomach gastric tumor 570 14 1082 83 4 64 1051 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1
SE_02_135000786 chr19:18392358-18419792 Sample_02_1350 Leukophereses leukophereses_p456 786 5 719 58 2 51 550 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1
SE_02_078400660 chr19:18392491-18434047 Sample_02_0784 Blood OSU-CLL 660 8 1154 86 4 148 1872 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1
SE_02_146000211 chr19:18393339-18424200 Sample_02_1460 Blood Mutz-3 211 4 815 60 3 51 582 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1
SE_02_119200514 chr19:18394039-18434339 Sample_02_1192 Brain GBM26 514 10 1121 83 4 149 1973 SSBP4,LRRC25,GDF15,MIR3189,ISYNA1
Genomic distribution of SEs associated with LRRC25
Genome Browser

The strength of the tissue affected by the gene

Expression of LRRC25

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)