Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000087253 |
| Gene: | LPCAT2 | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr16:55509072-55586666 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_127900128 | chr16:55469375-55564432 |
Sample_02_1279 | Bone | Mesenchymal stem cells | 128 | 19 | 2484 | 260 | 3 | 228 | 2221 | MMP2,LPCAT2,CAPNS2 |
| SE_02_060900549 | chr16:55469756-55515192 |
Sample_02_0609 | Liposarcoma | LPS141 | 549 | 9 | 1358 | 122 | 3 | 143 | 1903 | MMP2,LPCAT2 |
| SE_02_157900245 | chr16:55469781-55515229 |
Sample_02_1579 | Renal | 786-M1A | 245 | 8 | 1358 | 122 | 3 | 143 | 1903 | MMP2,LPCAT2 |
| SE_02_157100457 | chr16:55470559-55515777 |
Sample_02_1571 | Fibroblast | Fibroblast cells | 457 | 10 | 1343 | 123 | 3 | 143 | 1903 | MMP2,LPCAT2 |
| SE_02_138000233 | chr16:55470723-55514016 |
Sample_02_1380 | Pancreas | Pancreatic_tumor_associated_fibroblasts_CW1_untreated | 233 | 20 | 1287 | 113 | 2 | 143 | 1903 | MMP2,LPCAT2 |
| SE_01_006600574 | chr16:55470798-55514879 |
Sample_01_0066 | Smooth muscle | smooth-muscle-cell | 574 | 7 | 1320 | 116 | 2 | 143 | 1903 | MMP2,LPCAT2 |
| SE_02_155400923 | chr16:55475918-55511162 |
Sample_02_1554 | Gastrointestinal Stromal | GIST-3_KIT e11 | 923 | 11 | 1050 | 90 | 2 | 142 | 1903 | MMP2,LPCAT2 |
| SE_01_011501360 | chr16:55486111-55515223 |
Sample_01_0115 | Skeletal Muscle | myotube originated from skeletal muscle myoblast | 1360 | 6 | 854 | 74 | 2 | 102 | 1155 | MMP2,LPCAT2 |
| SE_02_137800913 | chr16:55486426-55529725 |
Sample_02_1378 | Pancreas | Pancreatic_tumor_associated_fibroblasts_CAF08_untreated | 913 | 12 | 1176 | 120 | 2 | 113 | 1217 | MMP2,LPCAT2,CAPNS2 |
| SE_01_001901051 | chr16:55486444-55516018 |
Sample_01_0019 | Brain and spinal cord | astrocyte | 1051 | 5 | 857 | 80 | 2 | 102 | 1155 | MMP2,LPCAT2 |
| SE_02_005700655 | chr16:55499184-55539300 |
Sample_02_0057 | Mammary gland | vHMEC | 655 | 6 | 1005 | 112 | 1 | 77 | 767 | MMP2,LPCAT2,CAPNS2 |
| SE_02_156900509 | chr16:55524316-55569687 |
Sample_02_1569 | Endothelial | Endothelial cells | 509 | 12 | 1048 | 118 | 0 | 116 | 458 | LPCAT2,CAPNS2,MMP2 |
| SE_02_005600429 | chr16:55525389-55570024 |
Sample_02_0056 | Mammary gland | HMEC | 429 | 9 | 1027 | 114 | 0 | 117 | 455 | LPCAT2,CAPNS2,MMP2 |
| SE_01_004501045 | chr16:55525851-55570207 |
Sample_01_0045 | Mammary gland | mammary-epithelial-cell | 1045 | 6 | 1019 | 114 | 0 | 117 | 429 | LPCAT2,CAPNS2,MMP2 |
| SE_02_066100350 | chr16:55525992-55569897 |
Sample_02_0661 | Mammary gland | MCF10DCIS-TetTCF7 | 350 | 12 | 1009 | 114 | 0 | 116 | 429 | LPCAT2,CAPNS2,MMP2 |
| SE_02_064800655 | chr16:55526196-55569651 |
Sample_02_0648 | Tracheobronchial epithelial | HTBE_H3N2_03h | 655 | 15 | 998 | 112 | 0 | 114 | 429 | LPCAT2,CAPNS2,MMP2 |
| SE_02_066000860 | chr16:55526233-55570619 |
Sample_02_0660 | Mammary gland | MCF10DCIS | 860 | 14 | 1026 | 115 | 1 | 117 | 429 | LPCAT2,CAPNS2,MMP2 |
| SE_02_152200906 | chr16:55534978-55543385 |
Sample_02_1522 | Skin | A375 RTKi | 906 | 2 | 189 | 23 | 0 | 10 | 32 | LPCAT2,CAPNS2 |
| SE_02_057200823 | chr16:55536016-55553499 |
Sample_02_0572 | Brain | LN229_1_mM_glucose | 823 | 5 | 375 | 49 | 0 | 27 | 128 | LPCAT2,CAPNS2 |
| SE_02_057000892 | chr16:55537523-55553382 |
Sample_02_0570 | Brain | LN229_10_mM_glucose | 892 | 4 | 343 | 46 | 0 | 25 | 118 | LPCAT2,CAPNS2 |
| SE_01_011100477 | chr16:55542595-55564354 |
Sample_01_0111 | Brain | SK-N-SH | 477 | 6 | 482 | 53 | 0 | 34 | 96 | LPCAT2,CAPNS2 |
| SE_02_065201098 | chr16:55551842-55569779 |
Sample_02_0652 | Tracheobronchial epithelial | HTBE_H3N2_mock | 1098 | 12 | 420 | 45 | 0 | 50 | 140 | LPCAT2,CAPNS2 |
| SE_02_010500764 | chr16:55551898-55569766 |
Sample_02_0105 | Skin | neonatal_keratinocytes | 764 | 3 | 419 | 45 | 0 | 50 | 140 | LPCAT2,CAPNS2 |
| SE_02_009900819 | chr16:55551966-55570095 |
Sample_02_0099 | Foreskin | Epidermal-Stem-Cells_shDNMT3B | 819 | 5 | 426 | 45 | 0 | 50 | 140 | LPCAT2,CAPNS2 |
| SE_02_133800383 | chr16:55552013-55569836 |
Sample_02_1338 | Esophagus | KYSE180 | 383 | 8 | 420 | 45 | 0 | 50 | 140 | LPCAT2,CAPNS2 |
| SE_02_064701179 | chr16:55552221-55569806 |
Sample_02_0647 | Tracheobronchial epithelial | HTBE_H1N1_mock | 1179 | 8 | 418 | 45 | 0 | 50 | 140 | LPCAT2,CAPNS2 |
| SE_02_048000979 | chr16:55552237-55571415 |
Sample_02_0480 | Gingival epithelial | HGEP | 979 | 11 | 463 | 48 | 1 | 51 | 140 | LPCAT2,CAPNS2,MMP2 |
| SE_02_064401091 | chr16:55553068-55568901 |
Sample_02_0644 | Tracheobronchial epithelial | HTBE_H1N1_12h | 1091 | 3 | 375 | 35 | 0 | 48 | 140 | LPCAT2,CAPNS2 |
| SE_02_005700726 | chr16:55553124-55570278 |
Sample_02_0057 | Mammary gland | vHMEC | 726 | 5 | 411 | 41 | 1 | 51 | 140 | LPCAT2,CAPNS2 |
| SE_02_071201040 | chr16:55556886-55573378 |
Sample_02_0712 | Pancreas | BxPC3_sgNEG | 1040 | 6 | 392 | 32 | 1 | 55 | 140 | LPCAT2,CAPNS2 |
| SE_02_064901076 | chr16:55558985-55568989 |
Sample_02_0649 | Tracheobronchial epithelial | HTBE_H3N2_06h | 1076 | 3 | 239 | 17 | 0 | 40 | 140 | LPCAT2,CAPNS2 |
| SE_02_070700729 | chr16:55563628-55573700 |
Sample_02_0707 | Pancreas | BxPC3 WT | 729 | 9 | 250 | 19 | 1 | 41 | 140 | LPCAT2,CAPNS2 |
Genomic distribution of SEs associated with LPCAT2