SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: LOC100506188 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044600195 chr6:57238475-57324297 Sample_02_0446 Bone osteosarcoma tumor P2 195 37 2335 283 14 67 185 PRIM2,LOC100506188,RAB23
SE_02_086700120 chr6:57239130-57319742 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 120 44 2197 267 13 58 131 PRIM2,LOC100506188,RAB23
SE_02_095100136 chr6:57239536-57267873 Sample_02_0951 HMSCs hMSCs 136 8 720 70 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_086900960 chr6:57240159-57268041 Sample_02_0869 Fibroblast VH10_NO_UV 960 14 706 70 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_056900447 chr6:57240196-57279578 Sample_02_0569 Periodontal ligament mesenchymal stem cell 447 18 1076 110 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_053300942 chr6:57240249-57268351 Sample_02_0533 Blood vessel Circle of Willis_54y 942 16 709 70 7 26 0 LOC100506188,PRIM2,RAB23
SE_02_050001079 chr6:57240264-57268647 Sample_02_0500 Fetal lung IMR90_#2 1079 15 715 72 7 27 0 LOC100506188,PRIM2,RAB23,ZNF451,BAG2
SE_02_155200075 chr6:57240277-57324651 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 75 20 2287 278 13 67 200 PRIM2,LOC100506188,RAB23
SE_02_127900430 chr6:57240393-57269037 Sample_02_1279 Bone Mesenchymal stem cells 430 5 722 75 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_055400409 chr6:57240736-57268582 Sample_02_0554 Other Aska shSSX 409 8 701 71 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_157300235 chr6:57240811-57313720 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 235 28 1995 242 11 38 0 LOC100506188,PRIM2,RAB23
SE_02_154900186 chr6:57240996-57268524 Sample_02_1549 Gastrointestinal Stromal GIST-430B 186 9 684 68 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_131000464 chr6:57241119-57268623 Sample_02_1310 Bone marrow ASMSCs 464 6 684 70 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_049900566 chr6:57241138-57268724 Sample_02_0499 Fetal lung IMR90 IR Senescence 566 13 688 71 7 27 0 LOC100506188,PRIM2,RAB23,ZNF451,BAG2
SE_02_142800620 chr6:57241159-57279653 Sample_02_1428 Shoulder fibroblast_316 620 8 1038 110 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_137400804 chr6:57241250-57268026 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 804 10 664 68 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_126300365 chr6:57241255-57268086 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 365 5 665 68 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_126400537 chr6:57241263-57268510 Sample_02_1264 Bone Im-GCT-4072_G34W KO 537 6 673 68 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_126700331 chr6:57241324-57268101 Sample_02_1267 Bone Im-GCT-4072_G34W 331 9 664 68 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_154800292 chr6:57241331-57284151 Sample_02_1548 Gastrointestinal Stromal GIST-226 292 14 1148 135 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_131100551 chr6:57241333-57268622 Sample_02_1311 Bone marrow HDMSCs 551 7 678 70 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_156600244 chr6:57241365-57279451 Sample_02_1566 Dermal Dermal fibroblast 244 8 1028 108 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_047400227 chr6:57241426-57268582 Sample_02_0474 Fibroblast umbilical cord Fibroblast 227 8 674 68 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_142700605 chr6:57241518-57279787 Sample_02_1427 Shoulder fibroblast_343 605 7 1035 109 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_142600364 chr6:57241588-57279359 Sample_02_1426 Shoulder fibroblast_341 364 9 1018 107 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_044700351 chr6:57241672-57268200 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 351 18 654 66 7 26 0 LOC100506188,PRIM2,RAB23
SE_02_060501200 chr6:57241748-57268714 Sample_02_0605 Skin Skin Fibroblast_DMSO 1200 5 665 69 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_141601020 chr6:57241778-57268121 Sample_02_1416 Brain SF9402 1020 7 649 66 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_137800734 chr6:57241833-57268552 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 734 8 657 67 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_145500278 chr6:57241835-57268537 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 278 7 657 67 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_145200254 chr6:57241842-57268612 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 254 6 659 68 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_145400451 chr6:57241853-57268078 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 451 6 645 66 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_145100393 chr6:57241901-57268595 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 393 8 651 67 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_157100284 chr6:57241968-57268658 Sample_02_1571 Fibroblast Fibroblast cells 284 5 645 68 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_137701159 chr6:57241986-57268060 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1159 6 629 66 7 24 0 LOC100506188,PRIM2,RAB23
SE_02_083900971 chr6:57242025-57268073 Sample_02_0839 Embryo hNPCs_K755R/+ 971 10 630 66 7 24 0 LOC100506188,PRIM2,RAB23
SE_01_009301074 chr6:57242135-57268470 Sample_01_0093 Aorta ascending aorta 1074 13 634 66 7 27 0 LOC100506188,PRIM2,RAB23
SE_02_061100512 chr6:57242687-57268206 Sample_02_0611 Liposarcoma DDLPS_T1 512 12 613 63 7 26 0 LOC100506188,PRIM2,RAB23
SE_02_066900064 chr6:57242855-57317477 Sample_02_0669 Prostate prostate cancer_DSG 64 30 2010 253 11 49 2 LOC100506188,PRIM2,RAB23
SE_02_142500586 chr6:57256734-57267919 Sample_02_1425 Shoulder fibroblast_384 586 6 253 32 4 12 0 LOC100506188,PRIM2,RAB23
SE_02_132801119 chr6:57257384-57268638 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1119 5 249 31 4 15 0 LOC100506188,PRIM2,RAB23
Genomic distribution of SEs associated with LOC100506188
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC100506188

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)