SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: LOC100129940 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_151500087 chr12:65811671-65870018 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 87 13 1414 28 8 202 1229 LOC100129940,RPSAP52,HMGA2
SE_02_153200101 chr12:65811882-65876979 Sample_02_1532 Mammary gland MCF10A 101 13 1574 36 9 216 1270 LOC100129940,RPSAP52,HMGA2
SE_02_066000198 chr12:65812009-65871734 Sample_02_0660 Mammary gland MCF10DCIS 198 15 1451 28 8 209 1229 LOC100129940,RPSAP52,HMGA2
SE_02_146100134 chr12:65816921-65853857 Sample_02_1461 Ovary A2780_shRen 134 16 887 17 5 147 729 LOC100129940,RPSAP52,HMGA2
SE_02_146300156 chr12:65817161-65855311 Sample_02_1463 Ovary A2780_shMBD3.232 156 12 905 17 5 154 729 LOC100129940,RPSAP52,HMGA2
SE_01_011400080 chr12:65817883-65856826 Sample_01_0114 Colon HCT116_encode 80 15 923 17 5 157 831 LOC100129940,RPSAP52,HMGA2
SE_02_138000204 chr12:65823755-65868809 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 204 17 1101 17 6 186 1189 LOC100129940,RPSAP52,HMGA2
SE_02_147100845 chr12:65823760-65853943 Sample_02_1471 Blood Outgrowth Endothelia BOEC 845 6 728 11 3 131 689 LOC100129940,RPSAP52,HMGA2
SE_02_137500289 chr12:65823831-65869448 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 289 25 1121 17 6 186 1183 LOC100129940,RPSAP52,HMGA2
SE_02_156900621 chr12:65825575-65903782 Sample_02_1569 Endothelial Endothelial cells 621 14 1897 37 9 315 1044 LOC100129940,RPSAP52,HMGA2
SE_02_058500252 chr12:65840847-65963303 Sample_02_0585 Umbilical vein HUVEC 0hour 252 39 2992 71 16 469 1634 LOC100129940,HMGA2,RPSAP52,RP11-366L20.2
SE_02_158300251 chr12:65841152-65906624 Sample_02_1583 Fetal lung IMR90_empty_GM 251 21 1614 38 6 240 839 LOC100129940,HMGA2,RPSAP52,RP11-366L20.2
SE_02_135600302 chr12:65842914-65903615 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 302 11 1501 33 6 215 775 LOC100129940,HMGA2,RPSAP52
SE_02_083900735 chr12:65845678-65877800 Sample_02_0839 Embryo hNPCs_K755R/+ 735 13 825 20 4 82 584 LOC100129940,HMGA2,RPSAP52
SE_02_063400003 chr12:65845915-65973101 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 3 32 3107 75 22 519 1778 LOC100129940,HMGA2,RPSAP52
SE_02_063300005 chr12:65845975-65972918 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 5 28 3099 74 22 519 1778 LOC100129940,HMGA2,RPSAP52
SE_02_105900494 chr12:65850237-65903240 Sample_02_1059 Bone A673_WT 494 12 1313 29 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_147300496 chr12:65850237-65903240 Sample_02_1473 Bone A-673 496 12 1313 29 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_045100186 chr12:65850939-65924811 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 186 22 1856 38 7 275 887 LOC100129940,HMGA2,RPSAP52
SE_02_060500763 chr12:65852360-65903170 Sample_02_0605 Skin Skin Fibroblast_DMSO 763 19 1249 28 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_060600738 chr12:65852611-65902609 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 738 15 1230 26 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_063200002 chr12:65852661-65974428 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 2 30 2955 72 22 517 1778 LOC100129940,HMGA2,MIR6074,RPSAP52
SE_02_060900044 chr12:65852819-65903136 Sample_02_0609 Liposarcoma LPS141 44 10 1230 27 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_108000168 chr12:65852889-65949016 Sample_02_1080 Muscle JR1 shCtrl 168 42 2340 53 12 366 887 LOC100129940,HMGA2,RPSAP52
SE_02_156600781 chr12:65852895-65903329 Sample_02_1566 Dermal Dermal fibroblast 781 17 1231 27 6 209 761 LOC100129940,HMGA2,RPSAP52
SE_02_110700428 chr12:65852912-65962633 Sample_02_1107 Brain SK-N-AS 428 46 2666 65 16 450 1524 LOC100129940,HMGA2,RPSAP52
SE_02_157100133 chr12:65852950-65957281 Sample_02_1571 Fibroblast Fibroblast cells 133 26 2529 61 14 405 1375 LOC100129940,HMGA2,RPSAP52
SE_02_046601146 chr12:65852956-65902546 Sample_02_0466 Adipose visceral adipocytes 1146 24 1220 26 6 206 761 LOC100129940,HMGA2,RPSAP52
SE_02_124200029 chr12:65853619-65969743 Sample_02_1242 Skin UISO_virus_negative 29 56 2804 70 20 513 1778 LOC100129940,HMGA2,RPSAP52
SE_02_084000067 chr12:65854136-65960802 Sample_02_0840 Embryo hNPCs_R1159Q/+ 67 27 2588 62 15 403 1524 LOC100129940,HMGA2,RPSAP52
SE_02_092100715 chr12:65854789-65904559 Sample_02_0921 Heart embryonic heart_CS22 715 12 1220 29 6 203 761 LOC100129940,HMGA2,RPSAP52
SE_02_092200491 chr12:65854799-65904704 Sample_02_0922 Heart fetal heart_PCW10_12434 491 13 1220 29 6 203 761 LOC100129940,HMGA2,RPSAP52
SE_02_131000065 chr12:65855417-65958241 Sample_02_1310 Bone marrow ASMSCs 65 33 2490 61 15 394 1464 LOC100129940,HMGA2,RPSAP52
SE_02_087600170 chr12:65856185-65949117 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 170 22 2267 52 12 355 859 LOC100129940,HMGA2,RPSAP52
SE_02_088300755 chr12:65856360-65902138 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 755 12 1129 25 6 195 717 LOC100129940,HMGA2,RPSAP52
SE_02_108100168 chr12:65856534-65949011 Sample_02_1081 Muscle CTR shCtrl 168 28 2256 52 12 354 820 LOC100129940,HMGA2,RPSAP52
SE_02_144900277 chr12:65857215-65902598 Sample_02_1449 Adipose SW872_YAP_TFE3 277 9 1124 24 5 197 619 LOC100129940,HMGA2,RPSAP52
SE_02_124100380 chr12:65858932-65897894 Sample_02_1241 Skin MCC26_virus_negative 380 15 960 20 5 171 498 LOC100129940,HMGA2,RPSAP52
SE_02_077100431 chr12:65859380-65902539 Sample_02_0771 Ovary OVCA429_shGRHL2 431 22 1076 23 5 175 445 LOC100129940,HMGA2,RPSAP52,LLPH
SE_02_082900075 chr12:65861679-65914010 Sample_02_0829 Lung H1703 SMARCA4-infected 75 1 1294 30 5 229 358 LOC100129940,HMGA2,RPSAP52
SE_02_082800078 chr12:65861925-65914066 Sample_02_0828 Lung H1703 Control-infected 78 1 1288 31 5 229 358 LOC100129940,HMGA2,RPSAP52
SE_02_076100045 chr12:65862382-65914008 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 45 1 1268 30 5 229 358 LOC100129940,HMGA2,RPSAP52
SE_02_077000125 chr12:65863547-65961197 Sample_02_0770 Ovary OVCA429_shLuc 125 71 2371 60 13 367 1121 LOC100129940,HMGA2,RPSAP52,LLPH
SE_02_086400072 chr12:65865651-65904978 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 72 1 963 26 3 160 358 LOC100129940,HMGA2,RPSAP52
SE_02_082500021 chr12:65865730-65973164 Sample_02_0825 Stomach SNU484 21 1 2597 66 19 468 1375 LOC100129940,HMGA2,RPSAP52
SE_02_086200232 chr12:65866419-65888613 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 232 1 528 14 1 79 358 LOC100129940,HMGA2,RPSAP52
SE_02_086500076 chr12:65866679-65904901 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 76 1 921 25 3 160 355 LOC100129940,HMGA2,RPSAP52
SE_02_126301379 chr12:65866691-65893830 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1379 4 663 17 2 117 353 LOC100129940,HMGA2,RPSAP52
SE_02_086800510 chr12:65866733-65903304 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 510 14 883 21 3 160 350 LOC100129940,HMGA2,RPSAP52
SE_02_086700207 chr12:65866736-65962724 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 207 45 2322 59 13 401 1113 LOC100129940,HMGA2,RPSAP52
SE_02_086600058 chr12:65866817-65911585 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 58 1 1107 28 3 196 348 LOC100129940,HMGA2,RPSAP52
SE_02_108500158 chr12:65866885-65912617 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 158 15 1123 28 3 205 342 LOC100129940,HMGA2,RPSAP52
SE_02_044600034 chr12:65866911-65897902 Sample_02_0446 Bone osteosarcoma tumor P2 34 13 743 17 3 153 339 LOC100129940,HMGA2,RPSAP52
SE_02_113300390 chr12:65866919-65903651 Sample_02_1133 Liver Hepatic stellate cells 390 12 889 21 3 160 339 LOC100129940,HMGA2,RPSAP52
SE_02_088000921 chr12:65867054-65903492 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 921 10 877 21 3 160 328 LOC100129940,HMGA2,RPSAP52
SE_02_088100715 chr12:65867100-65903683 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 715 9 881 21 3 160 325 LOC100129940,HMGA2,RPSAP52
SE_02_087801096 chr12:65867130-65903802 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1096 9 885 21 3 160 325 LOC100129940,HMGA2,RPSAP52
SE_02_146100172 chr12:65867154-65908698 Sample_02_1461 Ovary A2780_shRen 172 15 1001 26 3 185 325 LOC100129940,HMGA2,RPSAP52,LLPH
SE_02_126701550 chr12:65867258-65893622 Sample_02_1267 Bone Im-GCT-4072_G34W 1550 5 645 16 2 116 325 LOC100129940,HMGA2,RPSAP52
SE_02_066300127 chr12:65867564-65972784 Sample_02_0663 Thyroid TT 127 37 2529 64 19 466 1314 LOC100129940,HMGA2,RPSAP52
SE_02_126500908 chr12:65867856-65898182 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 908 7 720 16 3 150 271 LOC100129940,HMGA2,RPSAP52
SE_02_044700131 chr12:65867995-65893917 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 131 8 629 16 2 114 261 LOC100129940,HMGA2,RPSAP52
SE_02_105300109 chr12:65870294-65888601 Sample_02_1053 Esophagus OACM5.1 109 1 420 13 1 71 261 LOC100129940,HMGA2,RPSAP52
SE_01_011400174 chr12:65870715-65948851 Sample_01_0114 Colon HCT116_encode 174 33 1876 46 9 307 387 LOC100129940,HMGA2,RPSAP52
SE_02_092400577 chr12:65871802-65904449 Sample_02_0924 Heart fetal heart_PCW10_12569 577 11 778 23 3 145 261 LOC100129940,HMGA2,RPSAP52
SE_00_005301007 chr12:65871956-65903748 Sample_00_0053 Embryo trophoblast cell originated from H1 1007 10 755 20 3 145 261 LOC100129940,HMGA2,RPSAP52
SE_02_075900066 chr12:65874305-65914023 Sample_02_0759 Ovary BIN-67_Control 66 1 967 24 4 196 261 LOC100129940,HMGA2,RPSAP52
SE_02_076000048 chr12:65874383-65905066 Sample_02_0760 Ovary BIN-67_SMARCA4 48 1 729 21 3 142 261 LOC100129940,HMGA2,RPSAP52
SE_02_045300178 chr12:65874417-65905162 Sample_02_0453 Neuroblastoma SJNB3 178 1 731 21 3 142 261 LOC100129940,HMGA2,RPSAP52
SE_02_061701051 chr12:65875017-65902779 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1051 5 665 15 2 141 261 LOC100129940,HMGA2,RPSAP52
SE_02_124000386 chr12:65875300-65927004 Sample_02_1240 Skin MCC13_virus_negative 386 15 1262 24 4 226 387 LOC100129940,HMGA2,RPSAP52
SE_02_049400189 chr12:65875360-65898839 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 189 5 552 10 2 134 261 LOC100129940,HMGA2,RPSAP52
SE_02_048400245 chr12:65875429-65903739 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 245 5 673 14 2 141 261 LOC100129940,HMGA2,RPSAP52
SE_02_049500206 chr12:65875680-65898663 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 206 3 541 10 2 134 261 LOC100129940,HMGA2,RPSAP52
SE_02_131100807 chr12:65876598-65887818 Sample_02_1311 Bone marrow HDMSCs 807 1 254 5 0 58 261 LOC100129940,HMGA2,RPSAP52
SE_02_096300341 chr12:65876862-65902725 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 341 5 626 11 2 138 242 LOC100129940,HMGA2,RPSAP52
SE_02_127500672 chr12:65878190-65903217 Sample_02_1275 Prostate PC3_Vorinostat 672 17 596 12 2 128 177 LOC100129940,HMGA2
SE_02_069800207 chr12:65878629-65910209 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 207 10 768 18 2 162 177 LOC100129940,HMGA2
Genomic distribution of SEs associated with LOC100129940
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The strength of the tissue affected by the gene

Expression of LOC100129940

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)