SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000251533
Gene: LINC00605 Gene type: lncRNA
Strand: - External links:
Genomic region: chr14:103187221-103189028 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_113200049 chr14:103064728-103188120 Sample_02_1132 Pancreas KLM1 wt 49 42 3889 398 8 296 3409 LINC00605,EXOC3L4,TNFAIP2,CDC42BPB
SE_02_150200100 chr14:103104082-103206282 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 100 32 3251 381 6 165 3099 LINC00605,EXOC3L4,TNFAIP2,CDC42BPB
SE_02_150300185 chr14:103104184-103206575 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 185 34 3258 383 6 165 3070 LINC00605,EXOC3L4,TNFAIP2,CDC42BPB
SE_02_150100140 chr14:103105534-103198478 Sample_02_1501 Brain SHEP-21N_NOSPIKE 140 25 2968 347 5 154 2809 LINC00605,EXOC3L4,TNFAIP2,CDC42BPB
SE_02_136200536 chr14:103123471-103209847 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 536 25 2770 368 5 120 2092 LINC00605,TNFAIP2,EXOC3L4
SE_02_136100498 chr14:103123490-103209781 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 498 19 2768 366 5 119 2091 LINC00605,TNFAIP2,EXOC3L4
SE_02_157800196 chr14:103126494-103198740 Sample_02_1578 Mammary gland MCF7_DAC+455 196 17 2335 311 3 83 1954 LINC00605,TNFAIP2,EXOC3L4,CDC42BPB
SE_02_074800674 chr14:103150375-103208561 Sample_02_0748 Mammary gland HCC1599_WO 674 16 1891 254 4 30 379 LINC00605,TNFAIP2
SE_02_092901165 chr14:103172709-103209328 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1165 18 1145 156 3 32 379 LINC00605,TNFAIP2,EXOC3L4
SE_02_078000392 chr14:103175605-103211456 Sample_02_0780 Liver SMMC-7721 392 12 1131 162 4 33 379 LINC00605,TNFAIP2
SE_02_103100038 chr14:103176523-103302861 Sample_02_1031 Head and neck SCC1 contol 38 45 4017 436 8 56 430 LINC00605,EIF5,SNORA28
SE_02_098900420 chr14:103185111-103285299 Sample_02_0989 Kidney kidney cortex_WT 420 22 3254 360 8 56 379 LINC00605,EIF5,EXOC3L4
SE_02_061500575 chr14:103185549-103284910 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 575 27 3239 357 8 56 379 LINC00605,EIF5
SE_02_080800226 chr14:103186022-103261002 Sample_02_0808 Ovary RMG1_ARID1A KO 226 48 2584 294 8 34 379 LINC00605,CDC42BPB,EIF5
Genomic distribution of SEs associated with LINC00605
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00605

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)