SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000236384
Gene: LINC00479 Gene type: lncRNA
Strand: - External links:
Genomic region: chr21:41711520-41715775 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010700110 chr21:41612052-41712216 Sample_01_0107 Esophagus esophagus squamous epithelium 110 24 3393 87 14 59 382 LINC00111,LINC00479,MIR6814,LINC00112,RIPK4
SE_02_066300581 chr21:41676242-41713887 Sample_02_0663 Thyroid TT 581 12 1327 42 6 19 652 LINC00111,LINC00479,MIR6814,LINC00112
SE_02_149300633 chr21:41685980-41713347 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 633 7 972 37 5 13 434 LINC00111,LINC00479,MIR6814,LINC00112
SE_02_050500533 chr21:41699338-41730013 Sample_02_0505 Esophagus KYSE70_1 533 10 1183 75 7 10 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_051600534 chr21:41699338-41730013 Sample_02_0516 Esophagus KYSE70 534 10 1183 75 7 10 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_102500279 chr21:41701245-41730378 Sample_02_1025 Esophagus KYSE150 279 10 1128 75 6 14 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_153900666 chr21:41701560-41730172 Sample_02_1539 Nasopharyngeal C666-1 666 12 1100 74 6 12 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_125500112 chr21:41702191-41730660 Sample_02_1255 Bladder Bladder tumor Luminal2 112 9 1090 76 6 15 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_047600415 chr21:41702284-41727686 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 415 14 973 61 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_049300055 chr21:41702425-41717616 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 55 2 591 38 5 4 926 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_00_004900441 chr21:41702571-41715694 Sample_00_0049 Small intestine small intestine 30y 441 11 526 34 5 2 643 LINC00479,LINC00111,MIR6814,LINC00112
SE_02_052400108 chr21:41702622-41718002 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 108 8 593 40 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_069800327 chr21:41702715-41728423 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 327 12 983 64 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_077501695 chr21:41702895-41726711 Sample_02_0775 Pancreas EndoC-BH1_SE 1695 9 899 51 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_075400171 chr21:41703340-41719477 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 171 5 622 40 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_052500101 chr21:41703671-41717834 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 101 5 554 38 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_049400401 chr21:41703741-41717428 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 401 2 540 36 5 4 890 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_070900245 chr21:41703873-41730815 Sample_02_0709 Pancreas hT85_organoid 245 8 1033 74 6 15 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_105400613 chr21:41703902-41728802 Sample_02_1054 Esophagus SKGT4 613 8 954 63 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_075700296 chr21:41704630-41719466 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 296 3 562 38 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_072400132 chr21:41704693-41728549 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 132 5 913 62 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_047500770 chr21:41704711-41727983 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 770 5 885 58 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_103200739 chr21:41705032-41733356 Sample_02_1032 Head and neck SCC1 JQ1 739 11 1040 80 6 26 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_136500161 chr21:41705541-41717898 Sample_02_1365 Pancreas AsPC1-untreated 161 1 471 34 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_070500218 chr21:41705893-41717982 Sample_02_0705 Pancreas AsPC1 WT 218 1 453 32 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_127800904 chr21:41707265-41721590 Sample_02_1278 Chordoma UCH1_DMSO_48h 904 5 553 35 5 4 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_075300359 chr21:41711485-41718138 Sample_02_0753 Embryo ES-derived progenitors_FG type 359 1 267 13 2 2 944 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
Genomic distribution of SEs associated with LINC00479
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00479

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)