SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000260448
Gene: LCMT1-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr16:25085168-25111555 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087501219 chr16:25088314-25134764 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 1219 10 1350 70 1 57 337 LCMT1,LCMT1-AS1,LCMT1-AS2
SE_02_104701075 chr16:25092495-25139326 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1075 9 1336 68 1 50 337 LCMT1,LCMT1-AS1,LCMT1-AS2
SE_02_104801766 chr16:25092547-25136848 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1766 8 1254 62 1 50 337 LCMT1,LCMT1-AS1,LCMT1-AS2
SE_02_108800504 chr16:25106312-25126840 Sample_02_1088 Mammary gland T47D_shCtrl_45min 504 10 576 26 1 39 203 LCMT1,LCMT1-AS1,LCMT1-AS2
SE_02_139400436 chr16:25106510-25126575 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 436 3 565 22 1 39 203 LCMT1,LCMT1-AS1,LCMT1-AS2
SE_02_103602528 chr16:25106659-25136728 Sample_02_1036 Mammary gland HCC70_XY018 2528 12 812 36 1 49 337 LCMT1,LCMT1-AS1,LCMT1-AS2
Genomic distribution of SEs associated with LCMT1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of LCMT1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)