SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000213417
Gene: KRTAP2-4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:41065116-41065879 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_127901041 chr17:41051549-41067884 Sample_02_1279 Bone Mesenchymal stem cells 1041 1 562 105 4 131 540 KRTAP9-7,KRTAP2-4,KRTAP2-3,KRTAP2-2,KRTAP1-5,KRTAP2-1,KRTAP1-1,KRTAP1-3,KRTAP4-9,KRTAP3-1,KRTAP4-8,KRTAP1-4,KRTAP4-7
SE_02_031700398 chr17:41055163-41067990 Sample_02_0317 Neuroblastoma GICAN 398 1 450 87 4 99 398 KRTAP2-4,LOC730755,KRTAP2-2,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_026300680 chr17:41057371-41065643 Sample_02_0263 Osteoblastic hFOB_undifferentiated 680 1 305 63 4 62 271 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_027401111 chr17:41057798-41068728 Sample_02_0274 Endometriosis hTERT_KD 1111 1 382 76 4 85 356 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP1-5,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP4-11
SE_02_007400528 chr17:41058024-41068002 Sample_02_0074 Other 90-8TL_PDJQ 528 3 342 74 4 85 356 KRTAP2-4,LOC730755,KRTAP2-1,KRTAP4-9,KRTAP1-1,KRTAP1-3,KRTAP3-1,KRTAP2-2,KRTAP4-7,KRTAP4-8,KRTAP1-5
SE_02_076200458 chr17_JH159146v1_alt:147056-256346 Sample_02_0762 Podocyte podocyte_CTL 458 19 0 0 0 0 0 KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP3-1,KRTAP1-3,KRTAP4-7,KRTAP3-2,KRTAP4-11,KRTAP1-5,KRTAP4-9,KRTAP4-8,KRTAP2-2,KRTAP2-3,KRTAP1-4,KRTAP4-12
SE_02_155200226 chr17_JH159146v1_alt:162505-270074 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 226 40 0 0 0 0 0 KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP1-3,KRTAP4-7,KRTAP4-11,KRTAP1-5,KRTAP4-9,KRTAP4-8,KRTAP2-2,KRTAP2-3,KRTAP1-4,KRTAP4-12
SE_02_086700273 chr17_JH159146v1_alt:173255-273886 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 273 56 0 0 0 0 0 KRTAP4-7,KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP1-3,KRTAP4-12,KRTAP4-11,KRTAP1-5,KRTAP4-9,KRTAP4-8,KRTAP2-2,KRTAP2-3,KRTAP1-4
SE_02_127900110 chr17_JH159146v1_alt:173611-274637 Sample_02_1279 Bone Mesenchymal stem cells 110 19 0 0 0 0 0 KRTAP4-7,KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP1-3,KRTAP4-12,KRTAP4-11,KRTAP1-5,KRTAP4-9,KRTAP4-8,KRTAP2-2,KRTAP2-3,KRTAP1-4
SE_02_060500734 chr17_JH159146v1_alt:190480-217538 Sample_02_0605 Skin Skin Fibroblast_DMSO 734 7 0 0 0 0 0 KRTAP2-3,KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP2-2
SE_02_113700605 chr17_JH159146v1_alt:190516-217174 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 605 8 0 0 0 0 0 KRTAP2-3,KRTAP2-1,KRTAP1-1,KRTAP2-4,KRTAP2-2
SE_02_061001406 chr17_JH159146v1_alt:196177-217002 Sample_02_0610 Liposarcoma MLS 1765-92 1406 8 0 0 0 0 0 KRTAP2-3,KRTAP2-1,KRTAP2-4,KRTAP2-2
SE_02_063700642 chr17_JH159146v1_alt:196247-217561 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 642 20 0 0 0 0 0 KRTAP2-3,KRTAP2-1,KRTAP2-4,KRTAP2-2
SE_02_060600807 chr17_JH159146v1_alt:196288-217651 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 807 8 0 0 0 0 0 KRTAP2-3,KRTAP2-1,KRTAP2-4,KRTAP2-2
SE_02_056901062 chr17_JH159146v1_alt:196322-234441 Sample_02_0569 Periodontal ligament mesenchymal stem cell 1062 23 0 0 0 0 0 KRTAP2-3,KRTAP4-7,KRTAP2-1,KRTAP2-4,KRTAP2-2
SE_02_157100455 chr17_JH159146v1_alt:197013-217437 Sample_02_1571 Fibroblast Fibroblast cells 455 6 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_087900892 chr17_JH159146v1_alt:197395-217361 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 892 4 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_088301325 chr17_JH159146v1_alt:197430-217126 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1325 3 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_113300610 chr17_JH159146v1_alt:197703-217032 Sample_02_1133 Liver Hepatic stellate cells 610 9 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_088101256 chr17_JH159146v1_alt:197770-217268 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 1256 4 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_087800897 chr17_JH159146v1_alt:197791-217226 Sample_02_0878 Ovary SVOG3e cells_noDox_control 897 4 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_088001079 chr17_JH159146v1_alt:197808-217008 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1079 3 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_088201281 chr17_JH159146v1_alt:197826-217379 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1281 4 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_105200514 chr17_JH159146v1_alt:198303-215788 Sample_02_1052 Esophagus JH-EsoAd1 514 8 0 0 0 0 0 KRTAP2-3,KRTAP2-4,KRTAP2-2
SE_02_070500688 chr17_JH159146v1_alt:207255-258691 Sample_02_0705 Pancreas AsPC1 WT 688 22 0 0 0 0 0 KRTAP2-4,KRTAP4-7,KRTAP4-11,KRTAP4-9,KRTAP4-8,KRTAP2-3,KRTAP4-12
Genomic distribution of SEs associated with KRTAP2-4
Genome Browser

The strength of the tissue affected by the gene

Expression of KRTAP2-4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)