SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000117595
Gene: IRF6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:209785617-209806175 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900532 chr1:209744167-209789358 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 532 21 1138 133 10 126 1907 TRAF3IP3,IRF6,C1ORF74,HSD11B1,DIEXF
SE_02_153000316 chr1:209747758-209786831 Sample_02_1530 Peripheral blood neutrophils_0BA0X 316 10 1004 113 6 107 1680 TRAF3IP3,IRF6,C1ORF74,HSD11B1,DIEXF,LAMB3,G0S2,C1orf74
SE_02_082600786 chr1:209748009-209803984 Sample_02_0826 Stomach gastric tumor 786 13 1427 175 18 219 2455 TRAF3IP3,IRF6,C1ORF74,HSD11B1,DIEXF
SE_02_148100476 chr1:209764893-209787819 Sample_02_1481 Bone MIC 476 10 598 53 4 76 1138 TRAF3IP3,IRF6,C1ORF74,DIEXF
SE_02_016800188 chr1:209783685-209804244 Sample_02_0168 Prostate LNCaP 188 2 498 70 13 117 1070 IRF6,C1ORF74,TRAF3IP3,C1ORF107
SE_02_140600204 chr1:209783919-209808586 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 204 4 595 88 13 145 1196 C1ORF74,IRF6,DIEXF,TRAF3IP3
SE_02_140700264 chr1:209784001-209808482 Sample_02_1407 Prostate LNCaP_R1881 4h 264 3 593 88 13 145 1196 C1ORF74,IRF6,DIEXF,TRAF3IP3
SE_02_129700424 chr1:209784758-209807053 Sample_02_1297 Lung lung 424 7 548 84 13 134 1100 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_140800434 chr1:209785750-209808297 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 434 4 551 84 13 141 1063 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_150201042 chr1:209786360-209841342 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1042 10 1392 227 23 249 1494 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_051100297 chr1:209786508-209803658 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 297 2 428 62 11 113 812 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_051000262 chr1:209786758-209803775 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 262 2 426 61 12 112 778 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_050900236 chr1:209786839-209803618 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 236 2 422 60 11 112 773 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_071200140 chr1:209787268-209840737 Sample_02_0712 Pancreas BxPC3_sgNEG 140 11 1357 221 22 240 1328 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_071300480 chr1:209787287-209849302 Sample_02_0713 Pancreas BxPC3_sgTP63 480 9 1569 254 23 281 1543 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_064500033 chr1:209787507-209840656 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 33 17 1353 221 22 239 1303 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_124800261 chr1:209787792-209826641 Sample_02_1248 Bladder RT4 261 7 975 146 19 195 816 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_076000520 chr1:209789584-209846249 Sample_02_0760 Ovary BIN-67_SMARCA4 520 14 1448 228 20 257 1347 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_043900752 chr1:209789684-209826165 Sample_02_0439 Bone Hu09 752 12 914 134 17 166 668 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_009700007 chr1:209789958-209840901 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 7 7 1310 211 20 212 1104 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_064900036 chr1:209790027-209826777 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 36 14 929 142 18 169 638 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_064400023 chr1:209790082-209826740 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 23 14 925 142 18 169 638 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_132100801 chr1:209790089-209849990 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 801 15 1529 247 21 253 1305 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_065100069 chr1:209790166-209826513 Sample_02_0651 Tracheobronchial epithelial HTBE_H3N2_18h 69 13 916 139 18 169 638 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_039600660 chr1:209790389-209840856 Sample_02_0396 Skin NHEK-D 660 14 1293 211 20 212 1089 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_065000026 chr1:209790545-209826743 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 26 13 909 141 18 166 607 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_047900216 chr1:209790653-209850095 Sample_02_0479 Head and neck SCC25 216 20 1513 246 21 246 1257 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_064800059 chr1:209791273-209840796 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 59 13 1269 209 19 193 987 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_077000833 chr1:209791832-209841193 Sample_02_0770 Ovary OVCA429_shLuc 833 18 1270 207 18 196 1031 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_053000011 chr1:209791858-209896827 Sample_02_0530 Mammary gland MCF10A 11 38 2841 399 28 284 1899 DIEXF,IRF6,TRAF3IP3,C1ORF74,SYT14
SE_01_002700051 chr1:209792096-209841323 Sample_01_0027 Prostate epithelial-cell-of-prostate 51 7 1266 206 18 196 1031 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_136200149 chr1:209792164-209841456 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 149 12 1269 208 18 196 1021 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_064600066 chr1:209792184-209826957 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 66 9 882 138 16 145 513 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_064700292 chr1:209792263-209825944 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 292 6 846 125 15 137 508 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_005700169 chr1:209792282-209840965 Sample_02_0057 Mammary gland vHMEC 169 6 1256 203 18 191 991 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_110900600 chr1:209796330-209824019 Sample_02_1109 Brain SK-N-FI 600 13 704 100 12 126 349 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_006300153 chr1:209797248-209846009 Sample_02_0063 Skin Keratinocytes 153 6 1244 200 13 207 960 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_153200107 chr1:209797798-209846893 Sample_02_1532 Mammary gland MCF10A 107 8 1254 208 13 207 960 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_113200240 chr1:209798352-209826246 Sample_02_1132 Pancreas KLM1 wt 240 9 691 98 9 123 293 IRF6,DIEXF,C1ORF74,TRAF3IP3,C1orf74
SE_02_066000180 chr1:209798354-209850373 Sample_02_0660 Mammary gland MCF10DCIS 180 20 1323 211 13 211 960 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_030700405 chr1:209798846-209808968 Sample_02_0307 Neuroblastoma SJNB12 405 2 237 35 3 69 293 IRF6,TRAF3IP3,C1ORF74,C1ORF107
SE_02_009900517 chr1:209800606-209810820 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 517 1 266 38 4 74 293 IRF6,TRAF3IP3,C1ORF74,C1ORF107
SE_02_029400704 chr1:209800813-209841612 Sample_02_0294 Pancreatic L3-6_DMSO 704 5 1046 173 12 177 801 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_153900587 chr1:209800926-209824050 Sample_02_1539 Nasopharyngeal C666-1 587 12 579 80 9 118 293 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_02_061900160 chr1:209800958-209841603 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 160 14 1043 172 12 177 801 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_005600870 chr1:209801002-209825901 Sample_02_0056 Mammary gland HMEC 870 7 615 91 9 118 293 IRF6,TRAF3IP3,C1ORF74,C1ORF107
SE_02_022800336 chr1:209801183-209840721 Sample_02_0228 Oesophagus KYSE510 336 6 1010 168 12 169 726 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_01_004100005 chr1:209801211-209841319 Sample_01_0041 Skin keratinocyte 5 4 1026 170 12 177 780 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_050500614 chr1:209801274-209841037 Sample_02_0505 Esophagus KYSE70_1 614 7 1019 169 12 174 747 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_051600609 chr1:209801274-209841037 Sample_02_0516 Esophagus KYSE70 609 7 1019 169 12 174 747 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_01_004500009 chr1:209801278-209841489 Sample_01_0045 Mammary gland mammary-epithelial-cell 9 5 1030 172 12 173 769 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_065200250 chr1:209801316-209826771 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 250 10 635 100 10 119 258 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_03_000300012 chr1:209801535-209826701 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 12 5 629 99 10 108 205 IRF6,TRAF3IP3,C1ORF74,C1ORF107
SE_02_048000205 chr1:209802003-209846360 Sample_02_0480 Gingival epithelial HGEP 205 11 1132 188 12 184 841 DIEXF,IRF6,C1ORF74,TRAF3IP3,LAMB3,C1orf74
SE_02_050400324 chr1:209802203-209840353 Sample_02_0504 Esophagus KYSE510_1 324 11 971 165 12 148 600 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_125400280 chr1:209802640-209840634 Sample_02_1254 Bladder Bladder tumor Basal1 280 10 966 166 12 138 600 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_03_000100002 chr1:209802830-209840850 Sample_03_0001 Foreskin foreskin-keratinocyte 2 5 967 167 12 137 614 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_03_000200026 chr1:209803111-209826702 Sample_03_0002 Foreskin foreskin-keratinocyte-calcium2.5day 26 5 583 96 10 90 151 IRF6,TRAF3IP3,C1ORF74,C1ORF107
SE_02_000500047 chr1:209803310-209841688 Sample_02_0005 Cervical cervical-cancer_KDM5C 47 6 979 167 12 140 659 IRF6,C1ORF107,TRAF3IP3,C1ORF74
SE_02_136600158 chr1:209803479-209840692 Sample_02_1366 Pancreas BxPC3-untreated 158 10 947 163 12 132 602 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_136100154 chr1:209803553-209841101 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 154 7 959 164 12 136 644 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_070700118 chr1:209803716-209848456 Sample_02_0707 Pancreas BxPC3 WT 118 9 1124 192 13 164 818 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_066600066 chr1:209804412-209841221 Sample_02_0666 Prostate RWPE1 Lacz rep1 66 9 949 162 11 135 654 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_049200515 chr1:209804656-209841387 Sample_02_0492 Pharyng Detroit 562_LPS 515 9 946 162 11 135 659 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_103800065 chr1:209804712-209842111 Sample_02_1038 Pharynx FaDu LPS 65 8 966 164 11 135 665 DIEXF,IRF6,C1ORF74,TRAF3IP3
SE_02_094800705 chr1:209804788-209826623 Sample_02_0948 Pharyng Detroit562 705 3 550 88 9 84 151 IRF6,DIEXF,C1ORF74,TRAF3IP3
SE_01_005800460 chr1:209804933-209841435 Sample_01_0058 Prostate PC-3 460 3 941 162 11 135 659 IRF6,C1ORF107,TRAF3IP3,C1ORF74
Genomic distribution of SEs associated with IRF6
Genome Browser

The strength of the tissue affected by the gene

Expression of IRF6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)