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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000234857
Gene: HNRNPUL2-BSCL2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:62690275-62727384 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_063000523 chr11:62681008-62694615 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 523 3 338 25 2 46 1102 BSCL2,LRRN4CL,HNRNPUL2-BSCL2,C11ORF98,UBXN1,INTS5,UQCC3,GANAB,HNRNPUL2,LBHD1,METTL12,GNG3,SNORA57,TTC9C
SE_02_155700150 chr11:62681097-62691712 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 150 2 249 18 1 44 915 BSCL2,LRRN4CL,HNRNPUL2-BSCL2,C11ORF98,UBXN1,INTS5,UQCC3,GANAB,HNRNPUL2,LBHD1,METTL12,GNG3,SNORA57,TTC9C
SE_02_123700461 chr11:62694519-62710334 Sample_02_1237 Skin MKL2_virus_positive 461 3 445 31 0 87 942 BSCL2,HNRNPUL2-BSCL2,GNG3,C11ORF98,UBXN1,LRRN4CL,GANAB,UQCC3,INTS5,HNRNPUL2,ZBTB3,LBHD1,METTL12,SNORA57,TTC9C
SE_02_098901474 chr11:62703581-62714081 Sample_02_0989 Kidney kidney cortex_WT 1474 1 297 19 1 112 1028 BSCL2,HNRNPUL2,HNRNPUL2-BSCL2,GNG3,C11ORF98,UBXN1,POLR2G,LRRN4CL,UQCC3,ZBTB3,LBHD1,METTL12,SNORA57,TTC9C
SE_02_061701113 chr11:62704637-62711147 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1113 1 174 8 0 70 814 BSCL2,HNRNPUL2-BSCL2,GNG3,C11ORF98,UBXN1,LRRN4CL,UQCC3,HNRNPUL2,ZBTB3,LBHD1,METTL12,SNORA57,TTC9C
SE_02_097100985 chr11:62705375-62710746 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 985 1 137 5 0 65 770 BSCL2,HNRNPUL2-BSCL2,GNG3,C11ORF98,UBXN1,LRRN4CL,UQCC3,HNRNPUL2,ZBTB3,LBHD1,METTL12,SNORA57,TTC9C
SE_02_096300665 chr11:62723934-62731276 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 665 1 208 15 1 116 552 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_128300444 chr11:62724056-62730328 Sample_02_1283 Lung NCI-H2107_p8-15 444 1 184 13 1 114 540 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_147600750 chr11:62724184-62730879 Sample_02_1476 Bone EW-1 750 1 187 13 1 112 530 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_064000710 chr11:62724194-62729362 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 710 1 155 9 1 112 528 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_076000699 chr11:62724213-62730687 Sample_02_0760 Ovary BIN-67_SMARCA4 699 1 183 13 1 112 523 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_128001369 chr11:62724247-62731403 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1369 1 201 15 1 111 519 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_058400580 chr11:62724272-62731110 Sample_02_0584 Lung H1299 WT 580 1 190 13 1 110 514 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_055500760 chr11:62724507-62730727 Sample_02_0555 Other HAP1_WT 760 1 175 13 1 97 485 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_057500811 chr11:62724532-62729956 Sample_02_0575 Blood MOLM13_sgLKB1e2 811 1 158 11 1 97 484 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_058100646 chr11:62724604-62729948 Sample_02_0581 Blood MOLM13_empty_HG 646 1 157 11 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_135900874 chr11:62724606-62730197 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 874 1 163 11 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_148300691 chr11:62724621-62730445 Sample_02_1483 Bone RD-ES 691 1 170 13 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_109300444 chr11:62724640-62730364 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 444 1 169 13 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_064601046 chr11:62724645-62727955 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1046 1 97 7 0 76 274 HNRNPUL2,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1,TTC9C
SE_02_062700345 chr11:62724651-62730572 Sample_02_0627 Mammary gland WS8_VEH 345 1 171 13 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_057700709 chr11:62724652-62730080 Sample_02_0577 Blood MOLM13_empty 709 1 159 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_135200867 chr11:62724672-62730240 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 867 1 164 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_135100885 chr11:62724673-62730125 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 885 1 158 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_061700877 chr11:62724704-62730536 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 877 1 169 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_058200714 chr11:62724711-62729811 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 714 1 151 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_135401044 chr11:62724745-62730289 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 1044 1 164 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_148200831 chr11:62724748-62730770 Sample_02_1482 Bone POE 831 1 172 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_062500350 chr11:62724750-62730456 Sample_02_0625 Mammary gland WS8_4OHT 350 1 168 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_064501574 chr11:62724771-62727940 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1574 1 95 6 0 75 268 HNRNPUL2,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1,TTC9C
SE_02_064200434 chr11:62724803-62731501 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 434 1 195 14 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_109000393 chr11:62724813-62730245 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 393 1 164 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_122000495 chr11:62724832-62729557 Sample_02_1220 Bone marrow JJN3 495 1 146 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_061001378 chr11:62724833-62730350 Sample_02_0610 Liposarcoma MLS 1765-92 1378 1 165 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_113100794 chr11:62724844-62730247 Sample_02_1131 Pancreas T3M4 wt 794 1 162 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_158401360 chr11:62724850-62730137 Sample_02_1584 Brain U87 GBM_Mock 1360 1 157 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_085400571 chr11:62724851-62730194 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 571 1 159 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_135300852 chr11:62724875-62730429 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 852 1 166 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_109200408 chr11:62724876-62730412 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 408 1 166 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_094800651 chr11:62724888-62730210 Sample_02_0948 Pharyng Detroit562 651 1 160 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_096800487 chr11:62724889-62729712 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 487 1 146 10 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_108600344 chr11:62724889-62730305 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 344 1 162 12 1 97 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_074601213 chr11:62725015-62729242 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1213 1 137 8 1 97 473 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_01_011200316 chr11:62725096-62729261 Sample_01_0112 Embryonic kidney HEK293_encode 316 1 136 8 1 93 473 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_081601641 chr11:62725106-62729341 Sample_02_0816 Ovary Clear cell ovarian cancer 1641 1 137 8 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_046501194 chr11:62725106-62729911 Sample_02_0465 Adipose subcutaneous adipocytes 1194 1 148 10 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_109100374 chr11:62725106-62730001 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 374 1 152 10 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_068500563 chr11:62725121-62730019 Sample_02_0685 Lung NCI-H1048_no infection 563 1 151 10 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_098200462 chr11:62725153-62730265 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 462 1 157 12 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_064300489 chr11:62725175-62730360 Sample_02_0643 Mammary gland MDA-MB-436 489 1 158 12 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_065000582 chr11:62725214-62729974 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 582 1 144 9 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_123700776 chr11:62725281-62729152 Sample_02_1237 Skin MKL2_virus_positive 776 1 124 7 1 93 464 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_099301029 chr11:62725296-62729744 Sample_02_0993 Blood MOLM-13_empty 1029 1 133 9 1 93 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_086100650 chr11:62725694-62729393 Sample_02_0861 iPSCs SAH_WT 650 1 114 7 1 87 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_067300750 chr11:62725694-62729936 Sample_02_0673 Prostate LNCAP_FA 750 1 124 9 1 87 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_086000678 chr11:62725766-62729611 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 678 1 116 9 1 87 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_051100663 chr11:62725847-62730402 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 663 1 134 11 1 87 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_064701265 chr11:62725871-62729951 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1265 1 122 9 1 87 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_00_005500638 chr11:62726050-62729585 Sample_00_0055 Spleen spleen 34y 638 1 109 9 1 82 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
SE_02_132200736 chr11:62726171-62730016 Sample_02_1322 Connective Tissue HT1080_WT 736 1 115 8 1 81 477 HNRNPUL2,TTC9C,HNRNPUL2-BSCL2,POLR2G,LRRN4CL,BSCL2,TAF6L,GNG3,ZBTB3,UBXN1
Genomic distribution of SEs associated with HNRNPUL2-BSCL2
Genome Browser

The strength of the tissue affected by the gene

Expression of HNRNPUL2-BSCL2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)