SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000090615
Gene: GOLGA3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:132768914-132829078 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039600318 chr12:132688822-132789737 Sample_02_0396 Skin NHEK-D 318 28 3657 441 17 175 4612 ANKLE2,PXMP2,PGAM5,GOLGA3,POLE
SE_02_143200215 chr12:132701203-132788324 Sample_02_1432 Bone A673 STAG2 WT 215 31 3274 385 17 167 4320 ANKLE2,GOLGA3,PGAM5,PXMP2,POLE
SE_02_151000235 chr12:132719196-132773559 Sample_02_1510 Lung H3122_LR_Pano 235 25 2039 241 12 95 2545 ANKLE2,GOLGA3,PGAM5,POLE,PXMP2
SE_02_077900077 chr12:132747100-132857668 Sample_02_0779 Lymphoma U2932 77 45 3923 487 29 228 4507 CHFR,ANKLE2,GOLGA3,LOC101928530,PGAM5
SE_02_151900342 chr12:132753312-132770826 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 342 7 659 79 4 27 606 ANKLE2,GOLGA3,PGAM5
SE_02_111200494 chr12:132755408-132787209 Sample_02_1112 T lymphocyte THP-6 T-ALL 494 8 1230 129 8 65 1809 ANKLE2,GOLGA3,PGAM5
SE_02_155300796 chr12:132756299-132784934 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 796 11 1086 111 6 58 1636 ANKLE2,GOLGA3,PGAM5
SE_02_149200785 chr12:132756865-132786378 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 785 10 1139 114 7 58 1680 ANKLE2,GOLGA3,PGAM5
SE_02_087501021 chr12:132757225-132785548 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 1021 9 1086 113 7 58 1636 ANKLE2,GOLGA3,PGAM5
SE_02_101701509 chr12:132757285-132788230 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1509 6 1197 127 8 65 1809 ANKLE2,GOLGA3,PGAM5
SE_02_122901133 chr12:132757650-132774435 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1133 10 621 75 3 36 944 ANKLE2,GOLGA3,PGAM5
SE_02_075100397 chr12:132758888-132776645 Sample_02_0751 Lymphoma Rec-1_WO 397 4 647 75 3 39 1135 ANKLE2,GOLGA3,PGAM5
SE_00_005100741 chr12:132758902-132773434 Sample_00_0051 Adrenal gland adrenal gland 30y 741 12 526 68 3 30 853 ANKLE2,GOLGA3,PGAM5
SE_02_137601227 chr12:132758942-132771993 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 1227 6 478 63 3 21 658 ANKLE2,GOLGA3,PGAM5
SE_02_075800650 chr12:132758952-132776667 Sample_02_0758 Peripheral blood REH 650 4 646 75 3 39 1136 ANKLE2,GOLGA3,PGAM5
SE_02_017600845 chr12:132759412-132774659 Sample_02_0176 Peripheral blood LOUCY 845 2 564 69 3 36 984 ANKLE2,GOLGA3,PGAM5
SE_02_115300536 chr12:132759567-132773759 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 536 2 511 66 3 30 859 ANKLE2,GOLGA3,PGAM5
SE_02_115500422 chr12:132759673-132774365 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 422 3 531 64 3 36 920 ANKLE2,GOLGA3,PGAM5
SE_02_093001249 chr12:132759684-132771384 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1249 10 421 53 3 21 552 ANKLE2,GOLGA3,PGAM5
SE_02_075000391 chr12:132759768-132776454 Sample_02_0750 Lymphoma Rec-1_GSI 391 3 594 68 3 39 1093 ANKLE2,GOLGA3,PGAM5
SE_02_135000662 chr12:132759801-132773112 Sample_02_1350 Leukophereses leukophereses_p456 662 3 467 59 3 27 786 ANKLE2,GOLGA3,PGAM5
SE_02_103600579 chr12:132759816-132805648 Sample_02_1036 Mammary gland HCC70_XY018 579 12 1689 189 13 90 2513 ANKLE2,GOLGA3,PGAM5
SE_02_103500899 chr12:132759838-132787882 Sample_02_1035 Mammary gland HCC70_Vehicle 899 8 1069 110 8 65 1809 ANKLE2,GOLGA3,PGAM5
SE_02_081601255 chr12:132759858-132773695 Sample_02_0816 Ovary Clear cell ovarian cancer 1255 9 486 61 3 30 859 ANKLE2,GOLGA3,PGAM5
SE_02_083400519 chr12:132759861-132773086 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 519 3 466 58 3 27 783 ANKLE2,GOLGA3,PGAM5
SE_02_083700446 chr12:132760013-132772512 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 446 1 431 54 3 21 727 ANKLE2,GOLGA3,PGAM5
SE_02_083600453 chr12:132760221-132772605 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 453 1 420 55 3 21 733 ANKLE2,GOLGA3,PGAM5
SE_02_083500476 chr12:132760472-132772479 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 476 2 412 52 3 21 725 ANKLE2,GOLGA3,PGAM5
SE_02_082100224 chr12:132760485-132771440 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 224 1 379 47 3 21 557 ANKLE2,GOLGA3,PGAM5
SE_02_082000334 chr12:132760869-132771001 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 334 1 354 44 3 19 526 ANKLE2,GOLGA3
SE_02_068200114 chr12:132762120-132772478 Sample_02_0682 Blood Kasumi-1 114 1 383 45 3 10 508 GOLGA3,ANKLE2
SE_02_034200663 chr12:132762133-132773884 Sample_02_0342 Liver HSPCs_F0 663 3 431 51 3 19 642 GOLGA3,ANKLE2
SE_02_104301624 chr12:132763780-132777105 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1624 14 489 53 3 33 992 GOLGA3,ANKLE2
SE_02_158500439 chr12:132764352-132772054 Sample_02_1585 Blood SupB15 DMSO 439 7 298 38 3 10 454 GOLGA3,ANKLE2
SE_01_009600448 chr12:132765105-132774101 Sample_01_0096 B-cell lymphoma DOHH2 448 1 321 40 2 19 661 GOLGA3,ANKLE2
SE_02_104602214 chr12:132765438-132786548 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2214 13 823 77 6 49 1498 GOLGA3,ANKLE2
SE_02_078301046 chr12:132766238-132773515 Sample_02_0783 Blood MEC2 1046 1 253 30 2 19 642 GOLGA3,ANKLE2
SE_02_068600480 chr12:132775291-132777902 Sample_02_0686 Lung NCI-H128_no infection 480 2 102 13 1 12 236 GOLGA3,ANKLE2
SE_02_130000099 chr12:132804970-132882689 Sample_02_1300 Blood KARPAS-45 99 30 2605 372 14 123 2217 CHFR,GOLGA3,ANKLE2,LOC101928530
SE_02_146700609 chr12:132805193-132838699 Sample_02_1467 Blood HUDEP-2_LRFKO 609 9 1121 127 3 46 793 GOLGA3,ANKLE2,LOC101928530,CHFR
SE_02_108300973 chr12:132805799-132840960 Sample_02_1083 Macula macula 973 8 1177 136 4 56 911 CHFR,GOLGA3,ANKLE2,LOC101928530
SE_02_104603036 chr12:132807073-132834474 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3036 6 931 107 3 46 785 GOLGA3,ANKLE2
SE_02_122400668 chr12:132813476-132842040 Sample_02_1224 Bone marrow normal plasma cell 668 12 952 109 5 38 670 CHFR,GOLGA3,LOC101928530
SE_02_103601489 chr12:132819984-132836636 Sample_02_1036 Mammary gland HCC70_XY018 1489 3 569 69 2 16 327 GOLGA3
SE_02_039601365 chr12:132822874-132875195 Sample_02_0396 Skin NHEK-D 1365 10 1712 263 12 82 1564 CHFR,GOLGA3
Genomic distribution of SEs associated with GOLGA3
Genome Browser

The strength of the tissue affected by the gene

Expression of GOLGA3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)