SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000266010
Gene: GATA6-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr18:22164886-22169878 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_092300015 chr18:22153435-22217708 Sample_02_0923 Heart fetal heart_PCW10_12522 15 12 1576 22 8 337 1497 GATA6-AS1,GATA6
SE_02_074700013 chr18:22153520-22224648 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 13 35 1765 26 9 353 1497 GATA6-AS1,GATA6
SE_02_075500020 chr18:22157476-22195477 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 20 8 920 8 0 277 1252 GATA6-AS1,GATA6
SE_02_075200019 chr18:22158012-22195466 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 19 7 909 8 0 277 1252 GATA6-AS1,GATA6
SE_02_075300068 chr18:22158550-22195517 Sample_02_0753 Embryo ES-derived progenitors_FG type 68 7 893 8 0 277 1252 GATA6-AS1,GATA6
SE_02_092200012 chr18:22159961-22217913 Sample_02_0922 Heart fetal heart_PCW10_12434 12 10 1414 21 8 335 1497 GATA6-AS1,GATA6
SE_02_092100014 chr18:22160054-22223429 Sample_02_0921 Heart embryonic heart_CS22 14 14 1561 25 9 341 1497 GATA6-AS1,GATA6
SE_02_091300061 chr18:22160100-22217616 Sample_02_0913 Heart left ventricle_DCM_LV1304 61 16 1401 21 8 332 1497 GATA6-AS1,GATA6
SE_02_092500015 chr18:22160852-22217967 Sample_02_0925 Heart fetal heart_PCW17_12570 15 12 1386 21 8 329 1497 GATA6-AS1,GATA6
SE_02_074400004 chr18:22161402-22206004 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 4 25 1066 12 2 318 1497 GATA6-AS1,GATA6
SE_02_090800238 chr18:22161651-22217638 Sample_02_0908 Heart left ventricle_DCM_LV1262 238 21 1357 20 8 323 1497 GATA6-AS1,GATA6
SE_02_090100091 chr18:22161757-22213961 Sample_02_0901 Heart left ventricle_LV1471 91 20 1270 19 7 320 1497 GATA6-AS1,GATA6
SE_02_090300100 chr18:22161757-22215075 Sample_02_0903 Heart left ventricle_DCM_LV1009 100 17 1293 19 8 320 1497 GATA6-AS1,GATA6
SE_02_092400006 chr18:22161769-22217761 Sample_02_0924 Heart fetal heart_PCW10_12569 6 11 1360 20 8 324 1497 GATA6-AS1,GATA6
SE_02_090500068 chr18:22161773-22217568 Sample_02_0905 Heart left ventricle_DCM_LV1033 68 12 1352 20 8 321 1497 GATA6-AS1,GATA6
SE_02_091700070 chr18:22161775-22213980 Sample_02_0917 Heart left ventricle_DCM_LV1433 70 20 1269 19 7 320 1497 GATA6-AS1,GATA6
SE_02_090700092 chr18:22161780-22213864 Sample_02_0907 Heart left ventricle_DCM_LV1223 92 14 1266 19 7 320 1497 GATA6-AS1,GATA6
SE_02_090400056 chr18:22161802-22217660 Sample_02_0904 Heart left ventricle_DCM_LV1028 56 14 1356 20 8 324 1497 GATA6-AS1,GATA6
SE_02_074600050 chr18:22161829-22217610 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 50 30 1354 20 8 321 1497 GATA6-AS1,GATA6
SE_02_089100087 chr18:22161842-22213852 Sample_02_0891 Heart left ventricle_LV1202 87 22 1266 19 7 320 1497 GATA6-AS1,GATA6
SE_02_089800108 chr18:22161842-22217722 Sample_02_0898 Heart left ventricle_LV1356 108 15 1359 20 8 324 1497 GATA6-AS1,GATA6
SE_02_091200136 chr18:22161868-22213893 Sample_02_0912 Heart left ventricle_DCM_LV1300 136 18 1262 19 7 320 1497 GATA6-AS1,GATA6
SE_02_074500055 chr18:22161873-22217917 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 55 27 1358 20 8 324 1497 GATA6-AS1,GATA6
SE_02_090900076 chr18:22161896-22213396 Sample_02_0909 Heart left ventricle_DCM_LV1264 76 25 1248 19 7 320 1497 GATA6-AS1,GATA6
SE_02_088800100 chr18:22161916-22217499 Sample_02_0888 Heart left ventricle_LV1160 100 21 1340 20 8 321 1497 GATA6-AS1,GATA6
SE_02_088900092 chr18:22162052-22217695 Sample_02_0889 Heart left ventricle_LV1183 92 12 1348 20 8 324 1497 GATA6-AS1,GATA6
SE_02_091000082 chr18:22162053-22214954 Sample_02_0910 Heart left ventricle_DCM_LV1275 82 11 1281 19 8 320 1497 GATA6-AS1,GATA6
SE_02_091100101 chr18:22162066-22213843 Sample_02_0911 Heart left ventricle_DCM_LV1290 101 22 1256 19 7 320 1497 GATA6-AS1,GATA6
SE_02_089300062 chr18:22162145-22213984 Sample_02_0893 Heart left ventricle_LV1226 62 14 1255 19 7 319 1497 GATA6-AS1,GATA6
SE_02_089700118 chr18:22162274-22213861 Sample_02_0897 Heart left ventricle_LV1325 118 20 1249 19 7 315 1497 GATA6-AS1,GATA6
SE_00_005200050 chr18:22162628-22213843 Sample_00_0052 Heart left ventricle 3y 50 38 1241 19 7 314 1497 GATA6-AS1,GATA6
SE_02_090200077 chr18:22162705-22213839 Sample_02_0902 Heart left ventricle_LV1558 77 19 1239 19 7 314 1497 GATA6-AS1,GATA6
SE_02_151400147 chr18:22162888-22194532 Sample_02_1514 Lung Differentiated AT1-like cells 147 17 742 6 0 258 1252 GATA6-AS1,GATA6
SE_02_089600208 chr18:22162907-22217618 Sample_02_0896 Heart left ventricle_LV1294 208 24 1325 20 8 315 1497 GATA6-AS1,GATA6
SE_02_151300363 chr18:22162951-22193744 Sample_02_1513 Lung Transitional AT2->1 cells 363 14 725 6 0 253 1252 GATA6-AS1,GATA6
SE_01_009300065 chr18:22163302-22213847 Sample_01_0093 Aorta ascending aorta 65 8 1223 19 7 314 1497 GATA6-AS1,GATA6
SE_02_089000101 chr18:22163322-22213890 Sample_02_0890 Heart left ventricle_LV1200 101 17 1222 19 7 314 1497 GATA6-AS1,GATA6
SE_02_090600078 chr18:22163361-22213982 Sample_02_0906 Heart left ventricle_DCM_LV1072 78 16 1225 19 7 314 1497 GATA6-AS1,GATA6
SE_02_090000144 chr18:22163428-22214796 Sample_02_0900 Heart left ventricle_LV1452 144 19 1241 19 8 314 1497 GATA6-AS1,GATA6
SE_01_010100094 chr18:22163442-22212722 Sample_01_0101 Pancreas pancreas_54y 94 13 1188 18 7 314 1497 GATA6-AS1,GATA6
SE_02_091900112 chr18:22163583-22213810 Sample_02_0919 Heart left ventricle_DCM_LV1532 112 25 1208 17 7 314 1497 GATA6-AS1,GATA6
SE_02_088700088 chr18:22163684-22213570 Sample_02_0887 Heart left ventricle_LV1121 88 9 1202 17 7 314 1497 GATA6-AS1,GATA6
SE_01_011000126 chr18:22163695-22213771 Sample_01_0110 Aorta thoracic aorta_37y 126 20 1208 17 7 313 1497 GATA6-AS1,GATA6
SE_01_009800037 chr18:22163708-22214106 Sample_01_0098 Heart left ventricle_51y 37 7 1218 17 7 313 1497 GATA6-AS1,GATA6
SE_02_047600202 chr18:22163740-22198006 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 202 12 813 4 0 267 1252 GATA6-AS1,GATA6
SE_02_089200170 chr18:22163763-22213960 Sample_02_0892 Heart left ventricle_LV1215 170 19 1214 17 7 312 1497 GATA6-AS1,GATA6
SE_02_105100240 chr18:22163999-22195212 Sample_02_1051 Esophagus Eso26 240 22 724 4 0 255 1252 GATA6-AS1,GATA6
SE_01_010300063 chr18:22164048-22195027 Sample_01_0103 Pancreas pancreas_37y 63 9 720 4 0 255 1252 GATA6-AS1,GATA6
SE_00_005700060 chr18:22164184-22213697 Sample_00_0057 Heart right ventricle 3y 60 38 1187 17 7 311 1497 GATA6-AS1,GATA6
SE_02_091400119 chr18:22164200-22213726 Sample_02_0914 Heart left ventricle_DCM_LV1342 119 27 1188 17 7 311 1497 GATA6-AS1,GATA6
SE_00_005800058 chr18:22164248-22194897 Sample_00_0058 Stomach stomach 34y 58 17 704 3 0 254 1252 GATA6-AS1,GATA6
SE_02_091800114 chr18:22164348-22205618 Sample_02_0918 Heart left ventricle_DCM_LV1437 114 16 973 8 2 308 1497 GATA6-AS1,GATA6
SE_02_091600171 chr18:22164370-22198469 Sample_02_0916 Heart left ventricle_DCM_LV1392 171 17 804 4 0 265 1252 GATA6-AS1,GATA6
SE_02_046600198 chr18:22164510-22215352 Sample_02_0466 Adipose visceral adipocytes 198 35 1219 16 8 310 1497 GATA6-AS1,GATA6
SE_02_089400060 chr18:22164571-22213778 Sample_02_0894 Heart left ventricle_LV1248 60 16 1183 16 7 310 1497 GATA6-AS1,GATA6
SE_00_004600095 chr18:22164593-22213690 Sample_00_0046 Heart right ventricle_34y 95 32 1180 16 7 310 1497 GATA6-AS1,GATA6
SE_02_048101400 chr18:22164624-22192325 Sample_02_0481 Mammary gland MDA-MB231 1400 12 642 3 0 248 1252 GATA6-AS1,GATA6
SE_02_081600137 chr18:22164629-22214890 Sample_02_0816 Ovary Clear cell ovarian cancer 137 14 1209 16 8 310 1497 GATA6-AS1,GATA6
SE_02_089500088 chr18:22164636-22207024 Sample_02_0895 Heart left ventricle_LV1259 88 22 1014 9 3 308 1497 GATA6-AS1,GATA6
SE_02_055800472 chr18:22164665-22177175 Sample_02_0558 iPSCs FX52 iPSCs mock 472 6 270 3 0 176 1110 GATA6-AS1,GATA6
SE_02_052500060 chr18:22164698-22200447 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 60 12 847 7 1 265 1252 GATA6-AS1,GATA6
SE_02_092000181 chr18:22164731-22201050 Sample_02_0920 Heart left ventricle_DCM_LV1535 181 20 865 7 1 271 1360 GATA6-AS1,GATA6
SE_02_091500143 chr18:22164778-22213808 Sample_02_0915 Heart left ventricle_DCM_LV1371 143 27 1182 16 7 310 1497 GATA6-AS1,GATA6
SE_02_049400030 chr18:22164779-22194518 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 30 7 689 3 0 253 1252 GATA6-AS1,GATA6
SE_02_071100041 chr18:22164784-22210799 Sample_02_0711 Pancreas hN35_organoid 41 15 1112 13 5 310 1497 GATA6-AS1,GATA6
SE_02_132800086 chr18:22164794-22200482 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 86 18 845 7 1 265 1252 GATA6-AS1,GATA6
SE_02_052400068 chr18:22164806-22198374 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 68 9 796 4 0 265 1252 GATA6-AS1,GATA6
SE_02_089900209 chr18:22164822-22201029 Sample_02_0899 Heart left ventricle_LV1400 209 17 864 7 1 271 1358 GATA6-AS1,GATA6
SE_00_005500665 chr18:22164830-22194195 Sample_00_0055 Spleen spleen 34y 665 11 685 3 0 249 1252 GATA6-AS1,GATA6
SE_02_071000045 chr18:22164836-22195055 Sample_02_0710 Pancreas hN34_organoid 45 20 702 3 0 254 1252 GATA6-AS1,GATA6
SE_02_075700455 chr18:22164847-22195591 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 455 7 718 3 0 255 1252 GATA6-AS1,GATA6
SE_02_053301203 chr18:22164848-22197974 Sample_02_0533 Blood vessel Circle of Willis_54y 1203 11 786 3 0 265 1252 GATA6-AS1,GATA6
SE_02_075400144 chr18:22164863-22195149 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 144 5 703 3 0 254 1252 GATA6-AS1,GATA6
SE_01_010400411 chr18:22164872-22194892 Sample_01_0104 Lung upper lobe of left lung 411 15 697 3 0 254 1252 GATA6-AS1,GATA6
SE_02_049500031 chr18:22164887-22194243 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 31 4 684 3 0 249 1252 GATA6-AS1,GATA6
SE_02_075600478 chr18:22164898-22196078 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 478 8 728 3 0 264 1252 GATA6-AS1,GATA6
SE_00_004900033 chr18:22164903-22224536 Sample_00_0049 Small intestine small intestine 30y 33 26 1464 21 9 330 1497 GATA6-AS1,GATA6
SE_02_099700021 chr18:22164912-22172681 Sample_02_0997 iPSCs iPSC Derived Cardiomyocytes_4N 21 3 168 3 0 143 1012 GATA6-AS1,GATA6
SE_02_105300141 chr18:22164917-22223532 Sample_02_1053 Esophagus OACM5.1 141 42 1437 21 9 320 1497 GATA6-AS1,GATA6
SE_02_049300076 chr18:22164918-22194691 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 76 3 690 3 0 254 1252 GATA6-AS1,GATA6
SE_00_005100155 chr18:22164969-22217543 Sample_00_0051 Adrenal gland adrenal gland 30y 155 38 1265 17 8 311 1497 GATA6-AS1,GATA6
SE_01_010900465 chr18:22164971-22194776 Sample_01_0109 Colon transverse colon_54y 465 14 695 3 0 254 1252 GATA6-AS1,GATA6
SE_02_045300498 chr18:22165015-22207028 Sample_02_0453 Neuroblastoma SJNB3 498 10 1007 9 3 308 1497 GATA6-AS1,GATA6
SE_02_081900074 chr18:22165021-22199136 Sample_02_0819 Ovary Mucinous ovarian cancer 74 6 803 5 1 265 1252 GATA6-AS1,GATA6
SE_02_074300213 chr18:22165028-22210515 Sample_02_0743 Embryo ES derived mesoderm_day2 213 11 1101 13 5 310 1497 GATA6-AS1,GATA6
SE_02_103601840 chr18:22165038-22184806 Sample_02_1036 Mammary gland HCC70_XY018 1840 4 451 3 0 220 1252 GATA6-AS1,GATA6
SE_02_152700382 chr18:22165043-22211751 Sample_02_1527 Embryo naive embryonic stem cell 382 15 1128 14 7 310 1497 GATA6-AS1,GATA6
SE_02_047800048 chr18:22165047-22199226 Sample_02_0478 Colon normal colon mucosa 48 18 803 5 1 265 1252 GATA6-AS1,GATA6
SE_02_114100209 chr18:22165053-22172612 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 209 4 162 3 0 143 1012 GATA6-AS1,GATA6
SE_02_047700051 chr18:22165057-22199083 Sample_02_0477 Colon intestinal epithelial organoids_139a 51 19 802 5 1 265 1252 GATA6-AS1,GATA6
SE_02_056000844 chr18:22165085-22175042 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 844 3 218 3 0 143 1012 GATA6-AS1,GATA6
SE_02_135400507 chr18:22165117-22190912 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 507 11 603 3 0 234 1252 GATA6-AS1,GATA6
SE_01_009900172 chr18:22165153-22194822 Sample_01_0099 Colon transverse colon 172 8 690 3 0 254 1252 GATA6-AS1,GATA6
SE_02_135100497 chr18:22165257-22191065 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 497 9 607 3 0 235 1252 GATA6-AS1,GATA6
SE_02_095000177 chr18:22165407-22217555 Sample_02_0950 Umbilical vein HUVEC_WT 177 26 1258 17 8 303 1497 GATA6-AS1,GATA6
SE_02_135200424 chr18:22165430-22191051 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 424 11 605 3 0 227 1252 GATA6-AS1,GATA6
SE_02_135300541 chr18:22165634-22190999 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 541 12 598 3 0 219 1252 GATA6-AS1,GATA6
SE_02_136400164 chr18:22165738-22190963 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 164 9 596 3 0 218 1252 GATA6-AS1,GATA6
SE_01_010200144 chr18:22165808-22190120 Sample_01_0102 Artery tibial artery 144 8 576 3 0 215 1252 GATA6-AS1,GATA6
SE_01_010600045 chr18:22165818-22194574 Sample_01_0106 Adrenal gland adrenal gland 54y 45 14 673 3 0 238 1252 GATA6-AS1,GATA6
SE_02_088400420 chr18:22165884-22199243 Sample_02_0884 Colon LoVo 420 10 788 5 1 248 1252 GATA6-AS1,GATA6
SE_02_143600451 chr18:22165966-22195437 Sample_02_1436 Liver LSEC-Ctrl 451 8 692 3 0 237 1252 GATA6-AS1,GATA6
SE_02_151200376 chr18:22166125-22191198 Sample_02_1512 Lung Purified AT2 cells 376 10 592 3 0 218 1252 GATA6-AS1,GATA6
SE_02_076201486 chr18:22166161-22192637 Sample_02_0762 Podocyte podocyte_CTL 1486 6 620 3 0 231 1252 GATA6-AS1,GATA6
SE_02_132300037 chr18:22166185-22195690 Sample_02_1323 Colon DLD1_WT 37 1 693 3 0 238 1252 GATA6-AS1,GATA6
SE_02_125500193 chr18:22166218-22195330 Sample_02_1255 Bladder Bladder tumor Luminal2 193 7 686 3 0 237 1252 GATA6-AS1,GATA6
SE_02_104300864 chr18:22166276-22223985 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 864 24 1425 21 9 311 1497 GATA6-AS1,GATA6
SE_02_113300278 chr18:22166278-22194228 Sample_02_1133 Liver Hepatic stellate cells 278 11 657 3 0 230 1252 GATA6-AS1,GATA6
SE_02_135600218 chr18:22166449-22206908 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 218 12 980 9 3 282 1497 GATA6-AS1,GATA6
SE_01_010800013 chr18:22166561-22211740 Sample_01_0108 Adrenal gland adrenal gland_37y 13 20 1103 14 7 284 1497 GATA6-AS1,GATA6
SE_02_138000185 chr18:22166600-22194284 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 185 18 655 3 0 224 1252 GATA6-AS1,GATA6
SE_02_061100528 chr18:22166709-22192103 Sample_02_0611 Liposarcoma DDLPS_T1 528 11 607 2 0 219 1251 GATA6-AS1,GATA6
SE_02_143700863 chr18:22166918-22210263 Sample_02_1437 Liver LSEC-TNF 863 11 1063 12 5 284 1457 GATA6-AS1,GATA6
SE_02_141100006 chr18:22166923-22194167 Sample_02_1411 Colon KM12C 6 15 649 2 0 223 1212 GATA6-AS1,GATA6
SE_02_143800478 chr18:22167048-22200918 Sample_02_1438 Liver LSEC 478 9 821 6 1 245 1295 GATA6-AS1,GATA6
SE_01_011200038 chr18:22168299-22184105 Sample_01_0112 Embryonic kidney HEK293_encode 38 4 361 0 0 188 1005 GATA6-AS1,GATA6
SE_02_070300198 chr18:22168321-22195648 Sample_02_0703 Pancreas PATU8988S WT 198 7 646 0 0 223 1004 GATA6-AS1,GATA6
SE_02_071800099 chr18:22168325-22195571 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 99 9 645 0 0 222 1003 GATA6-AS1,GATA6
SE_02_137100092 chr18:22168377-22195497 Sample_02_1371 Pancreas Patu899S-untreated 92 12 641 0 0 222 993 GATA6-AS1,GATA6
SE_02_111400050 chr18:22168552-22174052 Sample_02_1114 Embryonic kidney HEK293 50 2 125 0 0 104 726 GATA6-AS1,GATA6
SE_02_125800191 chr18:22168555-22195577 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 191 5 637 0 0 215 966 GATA6-AS1,GATA6
SE_02_064501658 chr18:22168631-22172439 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1658 1 80 0 0 104 706 GATA6-AS1,GATA6
SE_02_064601121 chr18:22168803-22172468 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1121 1 76 0 0 104 686 GATA6-AS1,GATA6
SE_02_146900241 chr18:22168892-22199227 Sample_02_1469 Umbilical Vein HUVEC 241 9 717 2 1 226 908 GATA6-AS1,GATA6
SE_02_111100557 chr18:22168929-22231362 Sample_02_1111 Other HGrC1_SMAD2/3KO 557 20 1586 22 10 300 1151 GATA6-AS1,GATA6
SE_02_155700321 chr18:22168944-22172880 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 321 1 83 0 0 104 658 GATA6-AS1,GATA6
SE_02_155400264 chr18:22168951-22215479 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 264 14 1125 13 8 271 1139 GATA6-AS1,GATA6
Genomic distribution of SEs associated with GATA6-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of GATA6-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)