SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000230590
Gene: FTX Gene type: lncRNA
Strand: - External links:
Genomic region: chrX:73940435-74293574 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152300221 chrX:74229880-74264248 Sample_02_1523 Lung A549 DMSO 221 12 551 22 0 1 59 FTX,MIR374C,MIR545,MIR374B,ZCCHC13,MIR421,MIR374A
SE_02_123100490 chrX:74246085-74251888 Sample_02_1231 Lung PC9_siMED13L-1 490 3 92 3 0 0 0 FTX,MIR374C,MIR545,MIR374B,MIR374A,MIR421
SE_02_123200619 chrX:74246107-74251850 Sample_02_1232 Lung PC9_siMED13L-2 619 4 91 3 0 0 0 FTX,MIR374C,MIR545,MIR374B,MIR374A,MIR421
SE_02_086000277 chrX:74247713-74265786 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 277 8 300 10 0 0 0 FTX,MIR374C,MIR545,MIR374B,ZCCHC13,MIR421,MIR374A
SE_02_157200620 chrX:74248436-74291072 Sample_02_1572 iPSCs FiPSC 620 19 684 38 0 11 461 MIR545,MIR374A,FTX,MIR374C,MIR374B,ZCCHC13,MIR421
SE_02_117200566 chrX:74248498-74266372 Sample_02_1172 Embryo H9 WT 566 4 300 9 0 0 0 FTX,MIR374C,MIR545,MIR374B,ZCCHC13,MIR421,MIR374A
SE_02_086100402 chrX:74248524-74263961 Sample_02_0861 iPSCs SAH_WT 402 7 251 8 0 0 0 FTX,MIR374C,MIR545,MIR374B,ZCCHC13,MIR421,MIR374A
SE_02_156700965 chrX:74248655-74266022 Sample_02_1567 iPSCs CiPSC 965 10 294 9 0 0 0 FTX,MIR374C,MIR545,MIR374B,ZCCHC13,MIR421,MIR374A
SE_02_074200269 chrX:74248802-74291273 Sample_02_0742 Embryo ESCs_day0 269 18 683 38 0 12 461 MIR545,MIR374A,FTX,MIR374C,MIR374B,ZCCHC13,MIR421
SE_02_086000661 chrX:74283637-74292635 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 661 3 132 8 0 12 123 MIR545,MIR374A,FTX,ZCCHC13
SE_02_086100648 chrX:74283719-74292580 Sample_02_0861 iPSCs SAH_WT 648 4 125 8 0 12 108 MIR545,MIR374A,FTX,ZCCHC13
SE_02_146800795 chrX:74286005-74293577 Sample_02_1468 Blood HUDEP-2_WT 795 1 105 8 0 17 213 MIR545,MIR374A,FTX,ZCCHC13
SE_02_049401215 chrX:74289593-74293547 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1215 1 57 3 0 15 154 FTX,MIR545,MIR374A,ZCCHC13
Genomic distribution of SEs associated with FTX
Genome Browser

The strength of the tissue affected by the gene

Expression of FTX

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)