SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000160752
Gene: FDPS Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:155308748-155320666 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500724 chr1:155280425-155316816 Sample_02_0775 Pancreas EndoC-BH1_SE 724 10 907 67 3 250 2743 FDPS,PKLR,HCN3,RUSC1,RUSC1-AS1,GBA,SCAMP3,CLK2,MIR555,FAM189B
SE_04_000100738 chr1:155298311-155311566 Sample_04_0001 Blood heat shocked K562 738 2 309 22 2 47 571 FDPS,PKLR,RUSC1,HCN3,RUSC1-AS1,SCAMP3,CLK2,FAM189B,MIR555
SE_02_043100497 chr1:155299038-155311897 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 497 1 287 19 2 47 571 FDPS,PKLR,CLK2,C1ORF104,SCAMP3,RUSC1,MIR555,FAM189B,HCN3
SE_02_028600741 chr1:155304321-155311131 Sample_02_0286 Liver HuH7_IL-1alpha_1h 741 2 158 9 1 22 297 FDPS,CLK2,C1ORF104,SCAMP3,RUSC1,PKLR,MIR555,FAM189B,HCN3
SE_02_082700997 chr1:155305607-155311894 Sample_02_0827 Stomach normal gastric 997 2 139 7 1 21 297 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_141700309 chr1:155306302-155310705 Sample_02_1417 Brain SF7761 309 1 108 5 1 21 297 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_148000956 chr1:155307546-155312698 Sample_02_1480 Bone MHH-ES-1 956 2 107 3 1 25 396 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_104900903 chr1:155311030-155340480 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 903 15 697 34 1 220 2910 ASH1L,FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_085400604 chr1:155311188-155325672 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 604 3 339 20 1 148 1924 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_108200926 chr1:155311207-155325042 Sample_02_1082 Retina retina 926 3 332 20 1 138 1762 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_050500822 chr1:155311466-155326945 Sample_02_0505 Esophagus KYSE70_1 822 2 360 21 1 156 2141 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_076500354 chr1:155317672-155327478 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 354 1 233 11 0 153 1992 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_156001050 chr1:155319902-155344655 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1050 5 583 26 0 218 2572 ASH1L,FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_058400777 chr1:155319963-155329067 Sample_02_0584 Lung H1299 WT 777 3 218 9 0 143 1734 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_033900285 chr1:155319987-155326265 Sample_02_0339 Neuroblastoma NGP 285 1 147 6 0 134 1454 FDPS,RUSC1,C1ORF104,CLK2,PKLR,MIR555,HCN3
SE_01_009200942 chr1:155320056-155326144 Sample_01_0092 Vagina vagina 942 1 140 6 0 134 1446 FDPS,RUSC1,C1ORF104,CLK2,PKLR,MIR555,HCN3
SE_02_058600451 chr1:155320336-155332289 Sample_02_0586 Chordal patient-derived chordoma MGH_4 451 2 287 12 0 150 1883 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
SE_02_133300271 chr1:155320510-155326913 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 271 2 143 5 0 138 1508 FDPS,RUSC1,RUSC1-AS1,HCN3,CLK2,PKLR,MIR555
Genomic distribution of SEs associated with FDPS
Genome Browser

The strength of the tissue affected by the gene

Expression of FDPS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)